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用于结构生物学的超分辨率显微镜技术。

Super-resolution microscopy for structural biology.

作者信息

Danial John S H

机构信息

Centre of Biophotonics, University of St Andrews, St Andrews, UK.

SUPA School of Physics and Astronomy, University of St Andrews, St Andrews, UK.

出版信息

Nat Methods. 2025 Jun 27. doi: 10.1038/s41592-025-02731-1.

DOI:10.1038/s41592-025-02731-1
PMID:40579628
Abstract

Super-resolution microscopy (SRM) has revolutionized biological imaging, enabling the visualization of biological structures at molecular resolution. However, the diversity of SRM techniques, each operating through different mechanisms, combined with the lack of a clear consensus on the definition of resolution, has hindered the biological community from fully recognizing SRM's contribution to structural biology. I propose a framework for defining, measuring and reporting resolution in SRM. Within this framework, I examine the capabilities of state-of-the-art methods that can achieve 'ångström-scale resolution' and clarify the level of structural detail users can expect to observe. Finally, drawing from recent advancements, I explore pathways to extend SRM towards live structural imaging.

摘要

超分辨率显微镜(SRM)彻底改变了生物成像技术,能够以分子分辨率观察生物结构。然而,SRM技术的多样性,每种技术都通过不同的机制运行,再加上对分辨率定义缺乏明确的共识,阻碍了生物学界充分认识SRM对结构生物学的贡献。我提出了一个用于定义、测量和报告SRM分辨率的框架。在这个框架内,我研究了能够实现“埃级分辨率”的最先进方法的能力,并阐明了用户可以期望观察到的结构细节水平。最后,借鉴最近的进展,我探索了将SRM扩展到实时结构成像的途径。

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本文引用的文献

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MINFLUX fluorescence nanoscopy in biological tissue.生物组织中的MINFLUX荧光纳米显微镜技术。
Proc Natl Acad Sci U S A. 2024 Dec 24;121(52):e2422020121. doi: 10.1073/pnas.2422020121. Epub 2024 Dec 20.
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Direct optical measurement of intramolecular distances with angstrom precision.直接以埃精度测量分子内距离。
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ECLiPSE: a versatile classification technique for structural and morphological analysis of 2D and 3D single-molecule localization microscopy data.
ECLiPSE:一种用于二维和三维单分子定位显微镜数据的结构和形态分析的通用分类技术。
Nat Methods. 2024 Oct;21(10):1909-1915. doi: 10.1038/s41592-024-02414-3. Epub 2024 Sep 10.
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ProDOL: a general method to determine the degree of labeling for staining optimization and molecular counting.ProDOL:一种用于确定标记程度的通用方法,以优化染色和分子计数。
Nat Methods. 2024 Sep;21(9):1708-1715. doi: 10.1038/s41592-024-02376-6. Epub 2024 Aug 8.
5
Unveiling the limits of precision in iterative MINFLUX.揭示迭代MINFLUX中精度的极限。
J Microsc. 2024 Nov;296(2):129-132. doi: 10.1111/jmi.13338. Epub 2024 Jul 10.
6
Resolution in super-resolution microscopy - definition, trade-offs and perspectives.超分辨率显微镜中的分辨率——定义、权衡与展望
Nat Rev Mol Cell Biol. 2024 Sep;25(9):677-682. doi: 10.1038/s41580-024-00755-7. Epub 2024 Jul 1.
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DNA-PAINT adaptors make for efficient multiplexing.DNA-PAINT 接头使多重标记变得高效。
Cell Rep Methods. 2024 Jun 17;4(6):100801. doi: 10.1016/j.crmeth.2024.100801.
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Spatial proteomics in neurons at single-protein resolution.单蛋白分辨率下神经元中的空间蛋白质组学。
Cell. 2024 Mar 28;187(7):1785-1800.e16. doi: 10.1016/j.cell.2024.02.045.
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Unraveling cellular complexity with transient adapters in highly multiplexed super-resolution imaging.利用高度多重化超分辨率成像中的瞬时接头解析细胞复杂性。
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Proc Natl Acad Sci U S A. 2024 Mar 12;121(11):e2318870121. doi: 10.1073/pnas.2318870121. Epub 2024 Mar 5.