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R在土壤研究中的整合与发展:十年分析

The Integration and Growth of R in Soil Research: A 10-Year Analysis.

作者信息

Gao Meixiang, Yan Xiujuan, Li Xin, Zheng Ye, Lai Jiangshan

机构信息

Department of Geography and Spatial Information Techniques Ningbo University Ningbo China.

Zhejiang Collaborative Innovation Center for Land and Marine Spatial Utilization and Governance Research Ningbo University Ningbo China.

出版信息

Ecol Evol. 2025 Jun 26;15(7):e71545. doi: 10.1002/ece3.71545. eCollection 2025 Jul.

Abstract

The field of soil science has seen significant advancements in recent years, largely due to the integration of computational tools and statistical methods. Among these resources, the programming language R has emerged as a powerful and versatile platform for soil scientists, aiding in a spectrum of tasks from data analysis and modeling to visualization. Nonetheless, the broader trends and specific patterns of R usage in soil research have not been thoroughly documented. Our study investigated the prevalence of R and its package usage in 25,888 research articles published in 10 leading soil science journals over a decade, from 2014 to 2023. A considerable number of these articles, 7899 (or 30.5%), named R as their primary data analysis tool. The use of R has followed a steady linear growth pattern, rising from 13.9% in 2014 to 46.5% in 2023. The most commonly used R packages were "vegan," "ggplot2," "lme4," "nlme," and "randomForest," with each journal showcasing unique research focuses, resulting in varying frequencies of R package applications across different publications. Furthermore, there was a notable increase in the average number of R packages used per article throughout the study period. This research highlights the pivotal role of R, armed with its robust statistical and visualization capabilities, in enabling soil scientists to conduct comprehensive analyses and gain in-depth insights into the complex dimensions of soil science.

摘要

近年来,土壤科学领域取得了显著进展,这在很大程度上归功于计算工具和统计方法的整合。在这些资源中,编程语言R已成为土壤科学家强大且通用的平台,有助于从数据分析、建模到可视化等一系列任务。尽管如此,R在土壤研究中的更广泛趋势和具体使用模式尚未得到充分记录。我们的研究调查了2014年至2023年这十年间在10种领先土壤科学期刊上发表的25,888篇研究文章中R及其软件包的使用情况。其中相当数量的文章,即7899篇(或30.5%),将R列为其主要数据分析工具。R的使用呈现出稳定的线性增长模式,从2014年的13.9%上升到2023年的46.5%。最常用的R软件包是“vegan”“ggplot2”“lme4”“nlme”和“randomForest”,每种期刊都展示了独特的研究重点,导致不同出版物中R软件包的应用频率各异。此外,在整个研究期间,每篇文章使用的R软件包平均数量显著增加。这项研究凸显了R凭借其强大的统计和可视化能力,在使土壤科学家能够进行全面分析并深入洞察土壤科学复杂维度方面所发挥的关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0c6/12202774/a29a6bd0d64d/ECE3-15-e71545-g004.jpg

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