Barral Yann-Stanislas H M, Polonchuk Liudmila, Clerx Michael, Gavaghan David J, Mirams Gary R, Wang Ken
Roche Pharma Research and Early Development, Pharmaceutical Sciences, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd., Basel, Switzerland.
Department of Computer Science, University of Oxford, Oxford, United Kingdom.
PLoS Comput Biol. 2025 Jul 7;21(7):e1012913. doi: 10.1371/journal.pcbi.1012913. eCollection 2025 Jul.
During drug development, candidate compounds are extensively tested for proarrhythmic risk and in particular risk of Torsade de Pointes (TdP), as indicated by prolongation of the QT interval. Drugs that inhibit the rapid delayed rectifier [Formula: see text] current ([Formula: see text]) can prolong the action potential duration (APD) and thereby the QT interval, and so are routinely rejected. However, simultaneous inhibition of the L-type [Formula: see text] current ([Formula: see text]) can mitigate the effect of [Formula: see text] inhibition, so that including both effects can improve test specificity. Mathematical models of the action potential (AP) can be used to predict the APD prolongation resulting from a given level of [Formula: see text] and [Formula: see text] inhibition, but for use in safety-testing their predictive capabilities should first be carefully verified. We present the first systematic comparison between experimental drug-induced APD and predictions by AP models. New experimental data were obtained ex vivo for APD response to [Formula: see text] and/or [Formula: see text] inhibition by applying 9 compounds at different concentrations to adult human ventricular trabeculae at physiological temperature. Compounds with similar effects on [Formula: see text] and [Formula: see text] exhibited less APD prolongation compared to selective [Formula: see text] inhibitors. We then integrated in vitro [Formula: see text] patch-clamp data for [Formula: see text] and [Formula: see text] inhibition by the tested compounds into simulations with AP models. Models were assessed against the ex vivo data on their ability to recapitulate drug-induced APD changes observed experimentally. None of the tested AP models reproduced the APD changes observed experimentally across all combinations and degrees of [Formula: see text] and/or [Formula: see text] inhibition: they matched the data either for selective [Formula: see text] inhibitors or for compounds with comparable effects on [Formula: see text] and [Formula: see text]. This work introduces a new benchmarking framework to assess the predictivity of current and future AP models for APD response to [Formula: see text] and/or [Formula: see text] inhibition. This is an essential primary step towards an in silico framework that integrates in vitro data for translational clinical cardiac safety.
在药物研发过程中,候选化合物会针对致心律失常风险,尤其是尖端扭转型室性心动过速(TdP)风险进行广泛测试,QT间期延长即表明存在此类风险。抑制快速延迟整流钾电流(IKr)的药物可延长动作电位时程(APD),进而延长QT间期,因此通常会被淘汰。然而,同时抑制L型钙电流(ICaL)可减轻IKr抑制的影响,这样综合考虑两种效应可提高测试的特异性。动作电位(AP)的数学模型可用于预测给定水平的IKr和ICaL抑制所导致的APD延长,但要用于安全性测试,其预测能力首先应经过仔细验证。我们首次对实验性药物诱导的APD与AP模型的预测结果进行了系统比较。通过在生理温度下将9种化合物以不同浓度应用于成人人体心室小梁,获得了关于IKr和/或ICaL抑制的APD反应的新离体实验数据。与选择性IKr抑制剂相比,对IKr和ICaL具有相似作用的化合物表现出较小的APD延长。然后,我们将测试化合物对IKr和ICaL抑制的体外膜片钳数据整合到AP模型模拟中。根据重现实验观察到的药物诱导的APD变化的能力,针对离体数据对模型进行评估。在所有IKr和/或ICaL抑制的组合和程度中,没有一个测试过的AP模型能够重现实验观察到的APD变化:它们要么与选择性IKr抑制剂的数据匹配,要么与对IKr和ICaL具有可比作用的化合物的数据匹配。这项工作引入了一个新的基准框架,以评估当前和未来AP模型对IKr和/或ICaL抑制的APD反应的预测能力。这是迈向整合体外数据用于转化临床心脏安全性的计算机模拟框架的重要第一步。