Barral Yann-Stanislas H M, Shuttleworth Joseph G, Clerx Michael, Whittaker Dominic G, Wang Ken, Polonchuk Liudmila, Gavaghan David J, Mirams Gary R
Roche Pharma Research and Early Development, Pharmaceutical Sciences, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd., Basel, Switzerland.
Department of Computer Science, University of Oxford, Oxford, United Kingdom.
Front Physiol. 2022 Apr 26;13:879035. doi: 10.3389/fphys.2022.879035. eCollection 2022.
Computational models of the electrical potential across a cell membrane are longstanding and vital tools in electrophysiology research and applications. These models describe how ionic currents, internal fluxes, and buffering interact to determine membrane voltage and form action potentials (APs). Although this relationship is usually expressed as a differential equation, previous studies have shown it can be rewritten in an algebraic form, allowing direct calculation of membrane voltage. Rewriting in this form requires the introduction of a new parameter, called Γ in this manuscript, which represents the net concentration of all charges that influence membrane voltage but are not considered in the model. Although several studies have examined the impact of Γ on long-term stability and drift in model predictions, there has been little examination of its effects on model predictions, particularly when a model is refit to new data. In this study, we illustrate how Γ affects important physiological properties such as action potential duration restitution, and examine the effects of (in)correctly specifying Γ during model calibration. We show that, although physiologically plausible, the range of concentrations used in popular models leads to orders of magnitude differences in Γ, which can lead to very different model predictions. In model calibration, we find that using an incorrect value of Γ can lead to biased estimates of the inferred parameters, but that the predictive power of these models can be restored by fitting Γ as a separate parameter. These results show the value of making Γ explicit in model formulations, as it forces modellers and experimenters to consider the effects of uncertainty and potential discrepancy in initial concentrations upon model predictions.
细胞膜跨膜电位的计算模型是电生理研究与应用中长期存在且至关重要的工具。这些模型描述了离子电流、内部通量和缓冲作用如何相互作用以确定膜电压并形成动作电位(AP)。尽管这种关系通常表示为一个微分方程,但先前的研究表明它可以改写为代数形式,从而能够直接计算膜电压。以这种形式改写需要引入一个新参数,在本手稿中称为Γ,它代表影响膜电压但未在模型中考虑的所有电荷的净浓度。尽管有几项研究探讨了Γ对模型预测中长期稳定性和漂移的影响,但很少有人研究其对模型预测的影响,特别是当模型重新拟合新数据时。在本研究中,我们说明了Γ如何影响重要的生理特性,如动作电位时程恢复,并研究了在模型校准过程中(错误)指定Γ的影响。我们表明,尽管在生理上看似合理,但流行模型中使用的浓度范围会导致Γ有几个数量级的差异,这可能导致非常不同的模型预测。在模型校准中,我们发现使用不正确的Γ值会导致推断参数的估计有偏差,但通过将Γ作为一个单独的参数进行拟合,可以恢复这些模型的预测能力。这些结果表明在模型公式中明确Γ的价值,因为它迫使建模者和实验者考虑初始浓度的不确定性和潜在差异对模型预测的影响。