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恢复之路:受桃金娘锈病菌侵害的树种的基因组学与抗性检测

Pathways to Recovery: Genomics and Resistance Assays for Tree Species Devastated by the Myrtle Rust Pathogen.

作者信息

Chen Stephanie H, Yap Jia-Yee S, Viler Veronica, Stehn Craig, Sandhu Karanjeet S, Percival Julie, Pegg Geoff S, Menzies Tracey, Jones Ashley, Guo Karina, Giblin Fiona R, Cohen Joel, Edwards Richard J, Rossetto Maurizio, Bragg Jason G

机构信息

Research Centre for Ecosystem Resilience, Botanic Gardens of Sydney, Sydney, New South Wales, Australia.

School of Biotechnology and Biomolecular Sciences, UNSW Sydney, Kensington, New South Wales, Australia.

出版信息

Mol Ecol. 2025 Aug;34(16):e70030. doi: 10.1111/mec.70030. Epub 2025 Jul 10.

DOI:10.1111/mec.70030
PMID:40637263
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12329637/
Abstract

Myrtle rust is a plant disease caused by the invasive fungal pathogen Austropuccinia psidii (G. Winter) Beenken, which has a global host list of 480 species. It was detected in Australia in 2010 and has caused the rapid decline of native Myrtaceae species, including rainforest trees Rhodamnia rubescens (Benth.) Miq. (scrub turpentine) and Rhodomyrtus psidioides (G.Don) Benth. (native guava). Ex situ collections of these species have been established, with the goal of preserving remaining genetic variation. Analysis of reduced representation sequencing (DArTseq; n = 444 for R. rubescens and n = 301 for R. psidioides) showed genetic diversity is distributed along a latitudinal gradient across the range of each species. A panel of samples of each species (n = 27 for R. rubescens and n = 37 for R. psidioides) was resequenced at genome scale, revealing large historical effective population sizes, and little variation among individuals in inferred levels of deleterious load. In Rhodamnia rubescens, experimental assays (n = 297) identified individuals that are putatively resistant to myrtle rust. This highlights two important points: there are tangible pathways to recovery for species that are highly susceptible to rust via a genetically informed breeding programme, and there is a critical need to act quickly before more standing diversity is lost.

摘要

桃金娘锈病是一种由入侵性真菌病原体澳洲柄锈菌(Austropuccinia psidii (G. Winter) Beenken)引起的植物病害,该病原体的全球寄主名单上有480个物种。2010年在澳大利亚被发现,它导致了桃金娘科本土物种的迅速减少,包括雨林树木红胶木(Rhodamnia rubescens (Benth.) Miq.,矮蒲桃)和拟番樱桃(Rhodomyrtus psidioides (G.Don) Benth.,本土番石榴)。已经建立了这些物种的迁地收集库,目的是保存剩余的遗传变异。对简化基因组测序(DArTseq;红胶木n = 444,拟番樱桃n = 301)的分析表明,遗传多样性沿着每个物种分布范围的纬度梯度分布。对每个物种的一组样本(红胶木n = 27,拟番樱桃n = 37)进行了全基因组重测序,揭示了较大的历史有效种群规模,并且在推断的有害负荷水平上个体之间差异很小。在红胶木中,实验测定(n = 297)确定了可能对桃金娘锈病具有抗性的个体。这突出了两个要点:对于对锈病高度敏感的物种,通过基于遗传信息的育种计划有切实可行的恢复途径,并且迫切需要在更多现存多样性丧失之前迅速采取行动。

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本文引用的文献

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Reversing the decline of threatened koala () populations in New South Wales: Using genomics to enhance conservation outcomes.扭转新南威尔士州濒危考拉种群数量的下降趋势:利用基因组学提升保护成效。
Ecol Evol. 2024 Jul 31;14(8):e11700. doi: 10.1002/ece3.11700. eCollection 2024 Aug.
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Genomics-informed captive breeding can reduce inbreeding depression and the genetic load in zoo populations.
基于基因组学的圈养繁殖可以减少动物园种群的近交衰退和遗传负荷。
Mol Ecol Resour. 2024 Oct;24(7):e13967. doi: 10.1111/1755-0998.13967. Epub 2024 May 10.
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The positive impact of conservation action.保护行动的积极影响。
Science. 2024 Apr 26;384(6694):453-458. doi: 10.1126/science.adj6598. Epub 2024 Apr 25.
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A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes.高质量拟南芥假基因组揭示互叶白千层 NLR 型抗性基因的等位基因多样性。
Gigascience. 2022 Dec 28;12. doi: 10.1093/gigascience/giad102. Epub 2023 Dec 14.
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Gap-free genome assembly and comparative analysis reveal the evolution and anthocyanin accumulation mechanism of .无间隙基因组组装和比较分析揭示了……的进化和花青素积累机制。 (原文句子不完整,缺少具体研究对象)
Hortic Res. 2023 Jan 19;10(3):uhad005. doi: 10.1093/hr/uhad005. eCollection 2023 Mar.
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