Genetic diversity of isolates obtained from primates.

is a highly contagious bacterial respiratory pathogen with a broad host range of wild and domesticated mammals that can cause a variety of clinical disease outcomes ranging from asymptomatic carriage to severe pneumonia. The goal of this study was to evaluate the genetic diversity of isolates obtained from primates and evaluate the antimicrobial resistance harbored by these isolates. Two isolates were identified as belonging to lineage II and 13 isolates represented new sequence types within lineage I clonal complex 6. The lineage II isolates harbored the lowest sequence identity observed across all genes evaluated and did not contain several well characterized virulence and fimbrial genes. Western blotting revealed no reactivity to a lineage II strain when using antibodies generated against pertactin (PRN) from a lineage I-1 strain or antibodies generated against a domain of filamentous haemagglutinin (FHA) from a lineage I-1 strain. Isolates harbored variation within the locus containing genes encoding for the expression of antigenically distinct O-antigen types and the operon was replaced by the operon in several isolates, expanding the phylogenetic distribution of this operon replacement. Thirteen isolates exhibited phenotypic resistance to four antibiotic classes tested, however the -specific β-lactamase was the only antimicrobial resistance gene identified. Collectively, the data in this report expands the known phylogenetic diversity and genetic variation of isolates.