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设计用于荧光显微镜的明亮、超稳定罗丹明结合剂。

designed bright, hyperstable rhodamine binders for fluorescence microscopy.

作者信息

Chen Yuda, Yserentant Klaus, Hong Kibeom, Kuang Yiming, Bhowmick Arghya, Charles-Orszag Arthur, Lord Samuel J, Lu Lei, Hou Kaipeng, Mann Samuel I, Grimm Jonathan B, Lavis Luke D, Mullins R Dyche, DeGrado William F, Huang Bo

机构信息

Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA, USA.

Cardiovascular Research Institute, University of California San Francisco, San Francisco, CA, USA.

出版信息

bioRxiv. 2025 Jun 25:2025.06.24.661379. doi: 10.1101/2025.06.24.661379.

DOI:10.1101/2025.06.24.661379
PMID:40667161
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12262669/
Abstract

protein design has emerged as a powerful strategy with the promise to create new tools. The practical performance of designed fluorophore binders, however, has remained far from meeting fluorescence microscopy demands. Here, we design Rhodamine Binder (Rhobin) tags that combine ideal properties including size, brightness, and now adding hyperstability. Rhobin allows live and fixed cell imaging of a wide range of subcellular targets in mammalian cells. Its reversible fluorophore binding further enables live super-resolution STED microscopy with low photobleaching, as well as PAINT-type single-molecule localization microscopy. We showcase Rhobin in the extremophile living at 75°C, an application previously inaccessible by existing tags. Rhobin will serve as the basis for a new class of live cell fluorescent tags and biosensors.

摘要

蛋白质设计已成为一种强大的策略,有望创造新工具。然而,设计的荧光团结合剂的实际性能仍远未满足荧光显微镜的要求。在这里,我们设计了罗丹明结合剂(Rhobin)标签,它结合了理想的特性,包括大小、亮度,现在还增加了超稳定性。Rhobin可对哺乳动物细胞中的多种亚细胞靶点进行活细胞和固定细胞成像。其可逆的荧光团结合进一步实现了具有低光漂白的活细胞超分辨率受激发射损耗显微镜以及PAINT型单分子定位显微镜。我们在生活在75°C的嗜极端微生物中展示了Rhobin,这是现有标签以前无法实现的应用。Rhobin将成为一类新型活细胞荧光标签和生物传感器的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badf/12262669/aab126a327da/nihpp-2025.06.24.661379v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badf/12262669/c73ab20497cb/nihpp-2025.06.24.661379v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badf/12262669/aa56f236986a/nihpp-2025.06.24.661379v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badf/12262669/33dd18be8ad2/nihpp-2025.06.24.661379v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badf/12262669/b282db194b17/nihpp-2025.06.24.661379v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badf/12262669/aab126a327da/nihpp-2025.06.24.661379v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badf/12262669/c73ab20497cb/nihpp-2025.06.24.661379v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badf/12262669/aa56f236986a/nihpp-2025.06.24.661379v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badf/12262669/33dd18be8ad2/nihpp-2025.06.24.661379v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badf/12262669/b282db194b17/nihpp-2025.06.24.661379v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badf/12262669/aab126a327da/nihpp-2025.06.24.661379v1-f0005.jpg

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本文引用的文献

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Atomic context-conditioned protein sequence design using LigandMPNN.使用配体消息传递神经网络进行原子上下文条件蛋白质序列设计。
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De Novo Design of Proteins That Bind Naphthalenediimides, Powerful Photooxidants with Tunable Photophysical Properties.结合萘二酰亚胺的蛋白质的从头设计,萘二酰亚胺是具有可调光物理性质的强大光氧化剂。
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De novo design of transmembrane fluorescence-activating proteins.
跨膜荧光激活蛋白的从头设计。
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The use of thermostable fluorescent proteins for live imaging in .在……中使用热稳定荧光蛋白进行活细胞成像。 (原句不完整,翻译根据现有内容尽量完善)
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Single-sequence protein structure prediction by integrating protein language models.通过整合蛋白质语言模型进行单序列蛋白质结构预测。
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