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解析香草醛生物合成:豆荚发育的转录组学和代谢组学综合见解

Unravelling Vanillin Biosynthesis: Integrative Transcriptomic and Metabolomic Insights into Pod Development.

作者信息

Hernández-Peña Rebeca, Lorenzo-Manzanarez José Luis, Cruz-Ramírez Luis Alfredo, Reyes-López Delfino, Hernández-Domínguez Carmela, Pascual-Ramírez Fermín, Ordaz-Ortiz José J

机构信息

Metabolomics and Mass Spectrometry Group, Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Carretera Irapuato-Léon, Km. 9.6, Libramiento Norte, C.P. 36824 Irapuato, Guanajuato, Mexico.

Molecular and Developmental Complexity Group, Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Carretera Irapuato-Léon, Km. 9.6, Libramiento Norte, C.P. 36824 Irapuato, Guanajuato, Mexico.

出版信息

J Agric Food Chem. 2025 Jul 30;73(30):19094-19106. doi: 10.1021/acs.jafc.5c05293. Epub 2025 Jul 17.

DOI:10.1021/acs.jafc.5c05293
PMID:40674688
Abstract

Vanilla is the most popular flavor in the world and the second most valuable spice after saffron. Vanillin (4-hydroxy-3-methoxybenzaldehyde) is the predominant compound in natural vanilla flavor, a complex mixture comprising over 200 compounds. However, its biosynthetic pathway remains unclear. This study presents a comprehensive transcriptomic and metabolomic analysis of leaves and pods throughout development, providing insights into vanillin biosynthesis. Differential gene expression analysis identified key genes involved in the ferulate and benzoate pathways, while metabolomic profiling revealed stage-specific accumulation patterns of pathway intermediates. Vanillin levels peaked 6 months after pollination, followed by a steady increase in the glucoside form. This integrative omics approach suggests a coordinated regulation of both pathways during fruit development, offering valuable insights into the metabolic dynamics of vanillin production and establishing a foundation for future research on genetic and metabolic engineering strategies in .

摘要

香草是世界上最受欢迎的香料,也是仅次于藏红花的第二大最具价值的香料。香草醛(4-羟基-3-甲氧基苯甲醛)是天然香草风味中的主要化合物,天然香草风味是一种包含200多种化合物的复杂混合物。然而,其生物合成途径仍不清楚。本研究对整个发育过程中的叶片和豆荚进行了全面的转录组学和代谢组学分析,为香草醛的生物合成提供了见解。差异基因表达分析确定了参与阿魏酸和苯甲酸途径的关键基因,而代谢组学分析揭示了途径中间体的阶段特异性积累模式。香草醛水平在授粉后6个月达到峰值,随后以糖苷形式稳步增加。这种综合组学方法表明,在果实发育过程中,这两条途径受到协调调控,为香草醛生产的代谢动态提供了有价值的见解,并为未来关于香草醛遗传和代谢工程策略的研究奠定了基础。

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本文引用的文献

1
Comparative transcriptome profiling of vanilla (Vanilla planifolia) capsule development provides insights of vanillin biosynthesis.香草(香荚兰)蒴果发育的比较转录组分析为香草醛生物合成提供了见解。
BMC Plant Biol. 2025 Mar 18;25(1):343. doi: 10.1186/s12870-025-06360-w.
2
Plant Metabolic Network 16: expansion of underrepresented plant groups and experimentally supported enzyme data.植物代谢网络16:代表性不足的植物类群扩展及实验支持的酶数据。
Nucleic Acids Res. 2025 Jan 6;53(D1):D1606-D1613. doi: 10.1093/nar/gkae991.
3
Comprehensive metabolome characterization of leaves, internodes, and aerial roots of Vanilla planifolia by untargeted LC-MS and GC × GC-MS.
利用非靶向液相色谱-质谱联用(LC-MS)和气相色谱-气相色谱-质谱联用(GC×GC-MS)对香荚兰叶片、节间和气生根进行全面代谢组学表征。
Phytochem Anal. 2025 Jan;36(1):30-51. doi: 10.1002/pca.3414. Epub 2024 Jul 21.
4
MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation.MetaboAnalyst 6.0:迈向代谢组学数据处理、分析和解释的统一平台。
Nucleic Acids Res. 2024 Jul 5;52(W1):W398-W406. doi: 10.1093/nar/gkae253.
5
A phased Vanilla planifolia genome enables genetic improvement of flavour and production.分阶段的香草兰基因组助力风味与产量的遗传改良。
Nat Food. 2020 Dec;1(12):811-819. doi: 10.1038/s43016-020-00197-2. Epub 2020 Dec 11.
6
A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly.一份染色体水平、单体型定相的香草兰全基因组图谱,凸显了部分内复制对准确进行全基因组组装的挑战。
Plant Commun. 2022 Sep 12;3(5):100330. doi: 10.1016/j.xplc.2022.100330. Epub 2022 May 5.
7
HMDB 5.0: the Human Metabolome Database for 2022.HMDB 5.0:2022 年人类代谢组数据库。
Nucleic Acids Res. 2022 Jan 7;50(D1):D622-D631. doi: 10.1093/nar/gkab1062.
8
Genotyping-By-Sequencing diversity analysis of international Vanilla collections uncovers hidden diversity and enables plant improvement.国际香草品种资源的基因组重测序多样性分析揭示了隐藏的多样性,并能促进香草植物的改良。
Plant Sci. 2021 Oct;311:111019. doi: 10.1016/j.plantsci.2021.111019. Epub 2021 Aug 13.
9
The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity.《世界维管植物名录》,一个不断更新的探索全球植物多样性的资源。
Sci Data. 2021 Aug 13;8(1):215. doi: 10.1038/s41597-021-00997-6.
10
NMR-based leaf metabolic profiling of V. planifolia and three endemic Vanilla species from the Peruvian Amazon.基于 NMR 的 V. planifolia 和秘鲁亚马逊地区三种特有香荚兰属植物叶片代谢组学分析。
Food Chem. 2021 Oct 1;358:129365. doi: 10.1016/j.foodchem.2021.129365. Epub 2021 Feb 23.