Hawkins Charles, Xue Bo, Yasmin Farida, Wyatt Gabrielle, Zerbe Philipp, Rhee Seung Y
Plant Resilience Institute, Michigan State University, 1066 Bogue St, East Lansing, MI 48824, USA.
Department of Biochemistry and Molecular Biology, Michigan State University, 603 Wilson Road, East Lansing, MI 48824, USA.
Nucleic Acids Res. 2025 Jan 6;53(D1):D1606-D1613. doi: 10.1093/nar/gkae991.
The Plant Metabolic Network (PMN) is a free online database of plant metabolism available at https://plantcyc.org. The latest release, PMN 16, provides metabolic databases representing >1200 metabolic pathways, 1.3 million enzymes, >8000 metabolites, >10 000 reactions and >15 000 citations for 155 plant and green algal genomes, as well as a pan-plant reference database called PlantCyc. This release contains 29 additional genomes compared with PMN 15, including species listed by the African Orphan Crop Consortium and nonflowering plant species. Furthermore, 52 new enzymes with experimentally supported function information have been included in this release. The single-species databases contain a combination of experimental information from the literature and computationally predicted information obtained through PMN's database generation pipeline for a single species, while PlantCyc contains only experimental information but for any species within Viridiplantae. PMN is a comprehensive resource for querying, visualizing, analyzing and interpreting omics data with metabolic knowledge. It also serves as a useful and interactive tool for teaching plant metabolism.
植物代谢网络（PMN）是一个可在https://plantcyc.org获取的免费植物代谢在线数据库。其最新版本PMN 16提供了代谢数据库，涵盖155种植物和绿藻基因组的>1200条代谢途径、130万种酶、>8000种代谢物、>10000个反应以及>15000条参考文献，还有一个名为PlantCyc的泛植物参考数据库。与PMN 15相比，该版本新增了29个基因组，包括非洲孤儿作物联盟列出的物种和非开花植物物种。此外，此版本还纳入了52种具有实验支持功能信息的新酶。单物种数据库包含来自文献的实验信息与通过PMN针对单个物种的数据库生成管道获得的计算预测信息的组合，而PlantCyc仅包含实验信息，但涵盖绿藻门内的任何物种。PMN是利用代谢知识查询、可视化、分析和解释组学数据的综合资源。它也是教授植物代谢的有用且交互式工具。
