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三甲胺氧化物、尿素和水的二元及三元混合物中的静态和动态相关性

Static and Dynamic Correlations in Binary and Ternary Mixtures of TMAO, Urea, and Water.

作者信息

Hölzl Christoph, Horinek Dominik

机构信息

Institut für Physikalische und Theoretische Chemie, Universität Regensburg, 93040 Regensburg, Germany.

出版信息

J Phys Chem B. 2025 Aug 7;129(31):7972-7981. doi: 10.1021/acs.jpcb.5c03841. Epub 2025 Jul 24.

DOI:10.1021/acs.jpcb.5c03841
PMID:40702867
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12337090/
Abstract

Force field molecular dynamics simulations of aqueous solutions of TMAO and urea are used to investigate the delicate interactions in binary and ternary mixtures of one of the most important osmolyte systems. We explore the effect of the choice of force fields on local interactions and thermodynamics. Fully decomposed dielectric relaxation spectra from simulations are used to interpret existing experimental data and evaluate currently used fitting techniques. We show that many force field combinations describe the potential of mean force between urea and TMAO, but it is more challenging to describe thermodynamic data for the ternary system like activity coefficients.

摘要

利用三甲胺 N-氧化物(TMAO)和尿素水溶液的力场分子动力学模拟,研究了最重要的渗透溶质体系之一的二元和三元混合物中的微妙相互作用。我们探讨了力场选择对局部相互作用和热力学的影响。模拟得到的完全分解的介电弛豫谱用于解释现有的实验数据,并评估目前使用的拟合技术。我们表明,许多力场组合描述了尿素和 TMAO 之间的平均力势,但描述三元体系的热力学数据(如活度系数)更具挑战性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/90fcf4fa02ca/jp5c03841_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/2e2e375a146a/jp5c03841_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/1ebc9b35d38d/jp5c03841_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/218e1e9c6fe1/jp5c03841_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/d30c4f863f11/jp5c03841_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/28c2f277cff1/jp5c03841_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/533a3e3e7985/jp5c03841_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/90fcf4fa02ca/jp5c03841_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/2e2e375a146a/jp5c03841_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/1ebc9b35d38d/jp5c03841_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/218e1e9c6fe1/jp5c03841_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/d30c4f863f11/jp5c03841_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/28c2f277cff1/jp5c03841_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/533a3e3e7985/jp5c03841_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01dd/12337090/90fcf4fa02ca/jp5c03841_0007.jpg

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本文引用的文献

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Trimethylamine-N-oxide depletes urea in a peptide solvation shell.三甲胺 N-氧化物耗尽了肽溶剂化壳层中的尿素。
Proc Natl Acad Sci U S A. 2024 Apr 2;121(14):e2317825121. doi: 10.1073/pnas.2317825121. Epub 2024 Mar 27.
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Osmolyte induced protein stabilization: modulation of associated water dynamics might be a key factor.渗透溶质诱导的蛋白质稳定化:相关水动力学的调节可能是一个关键因素。
Phys Chem Chem Phys. 2023 Dec 6;25(47):32602-32612. doi: 10.1039/d3cp03357k.
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Effects of Crowding and Cosolutes on Biomolecular Function at Extreme Environmental Conditions.
极端环境条件下拥挤效应和共溶质对生物分子功能的影响
Chem Rev. 2023 Dec 13;123(23):13441-13488. doi: 10.1021/acs.chemrev.3c00432. Epub 2023 Nov 9.
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The ability of trimethylamine N-oxide to resist pressure induced perturbations to water structure.氧化三甲胺抵抗压力诱导的水结构扰动的能力。
Commun Chem. 2022 Sep 28;5(1):116. doi: 10.1038/s42004-022-00726-z.
5
Dielectric relaxation of water: assessing the impact of localized modes, translational diffusion, and collective dynamics.水的介电弛豫:评估局域模式、平移扩散和集体动力学的影响。
Phys Chem Chem Phys. 2021 Sep 29;23(37):20875-20882. doi: 10.1039/d1cp03507j.
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Pressure, Peptides, and a Piezolyte: Structural Analysis of the Effects of Pressure and Trimethylamine--oxide on the Peptide Solvation Shell.压力、肽与压溶剂:压力及三甲胺氧化物对肽溶剂化层影响的结构分析
J Phys Chem B. 2020 Jul 30;124(30):6508-6519. doi: 10.1021/acs.jpcb.0c03319. Epub 2020 Jul 16.
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Protein Stability in TMAO and Mixed Urea-TMAO Solutions.蛋白质在三甲胺 N-氧化物(TMAO)及尿素-TMAO混合溶液中的稳定性
J Phys Chem B. 2020 Jul 23;124(29):6181-6197. doi: 10.1021/acs.jpcb.0c04357. Epub 2020 Jun 25.
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Structure and thermodynamics of aqueous urea solutions from ambient to kilobar pressures: From thermodynamic modeling, experiments, and first principles simulations to an accurate force field description.水合尿素溶液在环境到千巴压力范围内的结构和热力学性质:从热力学建模、实验和第一性原理模拟到精确力场描述。
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9
Aqueous Mixtures of Urea and Trimethylamine-N-oxide: Evidence for Kosmotropic or Chaotropic Behavior?尿素和三甲胺-N-氧化物的水混合物:具有立方晶胞或紊乱行为的证据?
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Noncovalent Interactions between Trimethylamine N-Oxide (TMAO), Urea, and Water.三甲胺 N-氧化物(TMAO)、尿素和水之间的非共价相互作用。
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