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通过机器学习预测稳态光化学诱导动态核极化增强

Predictions of Steady-State Photo-CIDNP Enhancement by Machine Learning.

作者信息

Stefańska Marta, Müntener Thomas, Hiller Sebastian

机构信息

Biozentrum, University of Basel, Spitalstrasse 41, Basel 4056, Switzerland.

出版信息

J Am Chem Soc. 2025 Aug 6;147(31):27172-27178. doi: 10.1021/jacs.5c07462. Epub 2025 Jul 28.

DOI:10.1021/jacs.5c07462
PMID:40721401
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12333361/
Abstract

Photochemically induced dynamic nuclear polarization (photo-CIDNP) is a hyperpolarization method used to boost signal sensitivity in NMR spectroscopy. So far, there is no theory to predict the steady-state photo-CIDNP enhancement reliably, and hence, suitable target molecules need to be identified through tedious experimental screenings. Here, we explore the use of machine learning to predict steady-state photo-CIDNP enhancement. For a series of 27 indole-, five amino-acid-, and eight phenol-derivatives, the signal-to-noise enhancement (SNE) of steady-state photo-CIDNP experiments was measured and then connected to a combination of eight molecular features. The nucleophilic Fukui index was identified as a strong qualitative indicator of the site with the highest SNE in each molecule. Furthermore, a semiquantitative machine learning model based on Logistic Regression identified the sites with high enhancements (SNE > 90) in 100% of cases. Among several quantitative machine learning models for enhancement prediction, CatBoost Regressor and K-Nearest Neighbors showed the best performance. The results demonstrate the high potential of machine learning approaches for predictions of photo-CIDNP SNE, which will enable virtual prescreening of compound libraries.

摘要

光化学诱导动态核极化(photo-CIDNP)是一种用于提高核磁共振波谱信号灵敏度的超极化方法。到目前为止,尚无理论能够可靠地预测稳态photo-CIDNP增强效果,因此,需要通过繁琐的实验筛选来确定合适的目标分子。在此,我们探索使用机器学习来预测稳态photo-CIDNP增强效果。对于一系列27种吲哚衍生物、5种氨基酸衍生物和8种苯酚衍生物,测量了稳态photo-CIDNP实验的信噪比增强(SNE),并将其与8种分子特征的组合相关联。亲核福井指数被确定为每个分子中SNE最高位点的强定性指标。此外,基于逻辑回归的半定量机器学习模型在100%的情况下识别出增强效果高(SNE>90)的位点。在几种用于增强预测的定量机器学习模型中,CatBoost回归器和K近邻算法表现最佳。结果表明,机器学习方法在预测photo-CIDNP SNE方面具有很高的潜力,这将能够对化合物库进行虚拟预筛选。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f32/12333361/9d6e40b14a78/ja5c07462_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f32/12333361/40727758e60e/ja5c07462_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f32/12333361/1735920a29d2/ja5c07462_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f32/12333361/03d11e8c7e92/ja5c07462_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f32/12333361/9d6e40b14a78/ja5c07462_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f32/12333361/40727758e60e/ja5c07462_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f32/12333361/1735920a29d2/ja5c07462_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f32/12333361/03d11e8c7e92/ja5c07462_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f32/12333361/9d6e40b14a78/ja5c07462_0004.jpg

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本文引用的文献

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2
Dye-quencher pair screening for efficient photo-CIDNP: The role of molecular diffusion.用于高效光化学诱导动态核极化的染料-猝灭剂对筛选:分子扩散的作用
J Chem Phys. 2025 Mar 14;162(10). doi: 10.1063/5.0253296.
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Rapid Protein-Ligand Affinity Determination by Photoinduced Hyperpolarized NMR.
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