• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于完整静电势拓扑的详尽空间采样。

Exhaustive Spatial Sampling for Complete Topology of the Electrostatic Potential.

作者信息

Francisco Evelio, Pendás Ángel Martín, Suárez Dimas

机构信息

Departamento Química Física y Analítica, Universidad de Oviedo, Oviedo, Spain.

出版信息

J Comput Chem. 2025 Jul 30;46(20):e70188. doi: 10.1002/jcc.70188.

DOI:10.1002/jcc.70188
PMID:40728592
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12306600/
Abstract

This work presents a robust and efficient algorithm for exhaustively determining the critical points (CPs) of the molecular electrostatic potential (MEP) in 3D space. By combining Newton's method with a systematic physical space sampling strategy, we locate all CPs (maxima, minima, and saddle points) for both exact quantum-chemical MEPs and their tricubic interpolated approximations. The method is validated using a test function with known CPs and applied to a diverse set of molecules, including neutral systems, ions, and noncovalent complexes from the S66 and IONIC-HB datasets. Our results demonstrate that the interpolated MEP faithfully reproduces the topology of the exact potential in most cases, with minor discrepancies arising near nuclear positions or in regions of low gradient. The algorithm's efficiency (2-7 faster for interpolated calculations) and robustness make it suitable for large-scale analyses of MEP topologies, offering insights into chemical reactivity and noncovalent interactions.

摘要

这项工作提出了一种强大且高效的算法,用于在三维空间中详尽地确定分子静电势(MEP)的临界点(CPs)。通过将牛顿法与系统的物理空间采样策略相结合,我们定位了精确量子化学MEP及其三次立方插值近似的所有CPs(最大值、最小值和鞍点)。该方法通过使用具有已知CPs的测试函数进行了验证,并应用于各种分子,包括中性体系、离子以及来自S66和IONIC - HB数据集的非共价复合物。我们的结果表明,在大多数情况下,插值MEP忠实地再现了精确势的拓扑结构,仅在核位置附近或低梯度区域出现微小差异。该算法的效率(插值计算快2 - 7倍)和稳健性使其适用于MEP拓扑结构的大规模分析,为化学反应性和非共价相互作用提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/1175e1012aba/JCC-46-0-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/d1a020521660/JCC-46-0-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/9844d275c447/JCC-46-0-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/ece66e84fca7/JCC-46-0-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/119a254bc43a/JCC-46-0-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/d77573548797/JCC-46-0-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/1175e1012aba/JCC-46-0-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/d1a020521660/JCC-46-0-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/9844d275c447/JCC-46-0-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/ece66e84fca7/JCC-46-0-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/119a254bc43a/JCC-46-0-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/d77573548797/JCC-46-0-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3325/12306600/1175e1012aba/JCC-46-0-g004.jpg

相似文献

1
Exhaustive Spatial Sampling for Complete Topology of the Electrostatic Potential.用于完整静电势拓扑的详尽空间采样。
J Comput Chem. 2025 Jul 30;46(20):e70188. doi: 10.1002/jcc.70188.
2
Survivor, family and professional experiences of psychosocial interventions for sexual abuse and violence: a qualitative evidence synthesis.性虐待和暴力的心理社会干预的幸存者、家庭和专业人员的经验:定性证据综合。
Cochrane Database Syst Rev. 2022 Oct 4;10(10):CD013648. doi: 10.1002/14651858.CD013648.pub2.
3
Antidepressants for pain management in adults with chronic pain: a network meta-analysis.抗抑郁药治疗成人慢性疼痛的疼痛管理:一项网络荟萃分析。
Health Technol Assess. 2024 Oct;28(62):1-155. doi: 10.3310/MKRT2948.
4
The quantity, quality and findings of network meta-analyses evaluating the effectiveness of GLP-1 RAs for weight loss: a scoping review.评估胰高血糖素样肽-1受体激动剂(GLP-1 RAs)减肥效果的网状Meta分析的数量、质量及结果:一项范围综述
Health Technol Assess. 2025 Jun 25:1-73. doi: 10.3310/SKHT8119.
5
Systemic Inflammatory Response Syndrome全身炎症反应综合征
6
Management of urinary stones by experts in stone disease (ESD 2025).结石病专家对尿路结石的管理(2025年结石病专家共识)
Arch Ital Urol Androl. 2025 Jun 30;97(2):14085. doi: 10.4081/aiua.2025.14085.
7
Sexual Harassment and Prevention Training性骚扰与预防培训
8
Immunogenicity and seroefficacy of pneumococcal conjugate vaccines: a systematic review and network meta-analysis.肺炎球菌结合疫苗的免疫原性和血清效力:系统评价和网络荟萃分析。
Health Technol Assess. 2024 Jul;28(34):1-109. doi: 10.3310/YWHA3079.
9
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.系统性药理学治疗慢性斑块状银屑病:网络荟萃分析。
Cochrane Database Syst Rev. 2021 Apr 19;4(4):CD011535. doi: 10.1002/14651858.CD011535.pub4.
10
Signs and symptoms to determine if a patient presenting in primary care or hospital outpatient settings has COVID-19.在基层医疗机构或医院门诊环境中,如果患者出现以下症状和体征,可判断其是否患有 COVID-19。
Cochrane Database Syst Rev. 2022 May 20;5(5):CD013665. doi: 10.1002/14651858.CD013665.pub3.

本文引用的文献

1
Molecular Electrostatic Potential Topology Analysis of Noncovalent Interactions.分子静电势拓扑分析在非共价相互作用中的应用。
Acc Chem Res. 2023 Jul 4;56(13):1884-1895. doi: 10.1021/acs.accounts.3c00193. Epub 2023 Jun 23.
2
Chemical reactivity, molecular electrostatic potential and in-silico analysis on benzimidazole fungicide benomyl.苯并咪唑类杀菌剂苯菌灵的化学反应性、分子静电势及计算机模拟分析
Heliyon. 2022 Nov 5;8(11):e11417. doi: 10.1016/j.heliyon.2022.e11417. eCollection 2022 Nov.
3
Electrostatic Potential Topology for Probing Molecular Structure, Bonding and Reactivity.
静电势能拓扑学在探测分子结构、键合和反应性中的应用。
Molecules. 2021 May 29;26(11):3289. doi: 10.3390/molecules26113289.
4
Electrostatic Potential Energy in Protein-Drug Complexes.蛋白质-药物复合物中的静电势能。
Curr Med Chem. 2021;28(24):4954-4971. doi: 10.2174/0929867328666210201150842.
5
Recent developments in the general atomic and molecular electronic structure system.通用原子和分子电子结构系统的最新进展。
J Chem Phys. 2020 Apr 21;152(15):154102. doi: 10.1063/5.0005188.
6
Practical High-Quality Electrostatic Potential Surfaces for Drug Discovery Using a Graph-Convolutional Deep Neural Network.基于图卷积深度神经网络的药物发现实用高质量静电势表面。
J Med Chem. 2020 Aug 27;63(16):8778-8790. doi: 10.1021/acs.jmedchem.9b01129. Epub 2019 Sep 25.
7
Application of the Interacting Quantum Atoms Approach to the S66 and Ionic-Hydrogen-Bond Datasets for Noncovalent Interactions.相互作用量子原子方法在非共价相互作用的S66和离子氢键数据集上的应用。
Chemphyschem. 2018 Apr 17;19(8):973-987. doi: 10.1002/cphc.201701021. Epub 2018 Feb 19.
8
Perspective on Foundations of Solvation Modeling: The Electrostatic Contribution to the Free Energy of Solvation.溶剂化建模基础的视角:静电作用对溶剂化自由能的贡献。
J Chem Theory Comput. 2008 Jun;4(6):877-87. doi: 10.1021/ct800029c.
9
Advanced Corrections of Hydrogen Bonding and Dispersion for Semiempirical Quantum Mechanical Methods.半经验量子力学方法中氢键和色散作用的高级校正
J Chem Theory Comput. 2012 Jan 10;8(1):141-51. doi: 10.1021/ct200751e. Epub 2011 Dec 22.
10
Electrostatics at the origin of the stability of phosphate-phosphate complexes locked by hydrogen bonds.氢键锁定的磷酸盐-磷酸盐配合物稳定性源于静电作用。
Chemphyschem. 2012 Apr 23;13(6):1421-4. doi: 10.1002/cphc.201200068. Epub 2012 Mar 7.