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利用水稻直系同源基因对小麦粒重基因进行大规模鉴定与关联分析。

Large-scale identification and association analysis of wheat grain weight genes using rice orthologs.

作者信息

Zhao Wensha, Zheng Shusong, Zhang Aoyan, Yuan Meng, Song Pengbo, Song Kefeng, Li Yueyue, Xing Yuanhang, Zhao Huiling, Niu Jianqing, Wu Jianhui, Ling Hong-Qing, Sun Daojie, Ma Shengwei

机构信息

College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.

Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.

出版信息

Theor Appl Genet. 2025 Aug 5;138(8):197. doi: 10.1007/s00122-025-04988-8.

DOI:10.1007/s00122-025-04988-8
PMID:40762696
Abstract

The study identifies 314 wheat orthologs of rice grain weight-related genes, with multi-environment association analysis of 490 accessions uncovering 146 genes significantly linked to grain weight, offering potential targets for yield improvement. Grain weight is a key determinant of wheat yield. Dissection of more grain weight-related genes is crucial for improvement of wheat yield. Using homologous cloning method, a total of 104 rice grain weight-related genes was collected from published studies and their corresponding 314 orthologs were identified in wheat. Spatiotemporal expression analysis reveals that grain weight genes exhibit diverse expression profiles, with few showing grain-specific expression patterns. Approximately 36,000 variants in these grain weight-related genes were identified in a large natural wheat population. Candidate gene association analysis, using 490 common wheat accessions across five environments, reveals that 146 genes of them are significantly associated with grain weight. As a result of breeding practices, favorable alleles were significantly accumulated in modern wheat cultivars. These findings contribute to a better understanding of the genetic architecture of grain development and weight, offering potential targets for future wheat yield improvement.

摘要

该研究鉴定出314个水稻粒重相关基因的小麦直系同源基因,对490份材料进行多环境关联分析,发现146个基因与粒重显著相关,为产量提高提供了潜在靶点。粒重是小麦产量的关键决定因素。剖析更多粒重相关基因对提高小麦产量至关重要。利用同源克隆方法,从已发表的研究中总共收集了104个水稻粒重相关基因,并在小麦中鉴定出了它们相应的314个直系同源基因。时空表达分析表明,粒重基因表现出多样的表达模式,很少有基因呈现粒特异性表达模式。在一个大型天然小麦群体中,在这些粒重相关基因中鉴定出约36000个变异。利用490份普通小麦材料在五个环境下进行候选基因关联分析,发现其中146个基因与粒重显著相关。由于育种实践,有利等位基因在现代小麦品种中显著积累。这些发现有助于更好地理解籽粒发育和粒重的遗传结构,为未来小麦产量提高提供潜在靶点。

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本文引用的文献

1
Haplotype-resolved, gap-free genome assemblies provide insights into the divergence between Asian and European pears.单倍型解析、无间隙基因组组装为亚洲梨和欧洲梨之间的差异提供了见解。
Nat Genet. 2025 Aug 6. doi: 10.1038/s41588-025-02273-4.
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A comprehensive map of DNA-segment copy number variation in 491 genomes of common wheat uncovers genes associated with multiple agronomic traits.普通小麦491个基因组中DNA片段拷贝数变异的综合图谱揭示了与多种农艺性状相关的基因。
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过去 70 年来中国小麦育种中重要农艺性状的遗传改良。
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Beyond the Standard GWAS-A Guide for Plant Biologists.超越标准全基因组关联研究——植物生物学家指南
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TBtools-II: A "one for all, all for one" bioinformatics platform for biological big-data mining.TBtools-II:一个“一专多能”的生物信息学大数据挖掘平台。
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Stage-specific genotype-by-environment interactions determine yield components in wheat.特定生育期的基因型-环境互作决定小麦产量构成因素。
Nat Plants. 2023 Oct;9(10):1688-1696. doi: 10.1038/s41477-023-01516-8. Epub 2023 Sep 21.
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A high-resolution genotype-phenotype map identifies the TaSPL17 controlling grain number and size in wheat.高分辨率基因型-表型图谱鉴定控制小麦粒数和大小的 TaSPL17。
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