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一种用于检测酶促聚乙烯氧化的高通量检测方法。

A high throughput assay to detect enzymatic polyethylene oxidation.

作者信息

Klauer Ross R, Williams Mekhi, Nguyen Darien K, Tarr Megan, Vlachos Dionisios G, Solomon Kevin V, Blenner Mark A

机构信息

Chemical and Biomolecular Engineering, University of Delaware, Newark, DE 19716.

Center for Plastics Innovation (CPI), University of Delaware, Newark, DE 19716. 150 Academy St. Newark, DE 19713.

出版信息

bioRxiv. 2025 Jul 27:2025.07.23.666384. doi: 10.1101/2025.07.23.666384.

DOI:10.1101/2025.07.23.666384
PMID:40777425
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12330763/
Abstract

Biological plastics deconstruction and upcycling have emerged as a sustainable alternative to traditional recycling technologies for plastics waste. The discovery and engineering of efficient thermostable poly(ethylene terephthalate) (PET) hydrolases has made biological PET recycling possible at scale; however, enzymes for non-PET plastics, which account for approximately 70% of all plastics produced, remain largely undiscovered. To accelerate the discovery of such enzymes, a high throughput screening (HTS) platform is needed. Here, we develop a HTS liquid-based assay to detect one of the first committed steps of polyolefin degradation, oxidation of the C-H bond to an aldehyde. We test 4-hydrazino-7-nitro-2,1,3-benxoxadiozole hydrazine (NBD-H), which reacts with generated aldehydes to form a fluorescent hydrazone, on oxidized low-density polyethylene (LDPE) films. Hydrazone generation correlated well with established carbonyl index metrics for polymer oxidation (R = 0.97). Moreover, we demonstrate that the probe reliably identifies LDPE-active dye decolorizing peroxidases (DyPs) that generate aldehydes on LDPE films, serving as effective screen as demonstrated by a receiver operating characteristic area under the curve of 0.95. Due to the rapid fluorescent readout and parallelization in microarray plates, this assay enables screening thousands of enzymes in 24 hours compared to time-consuming established approaches, accelerating discovery of enzymes that catalyze the first step of polyolefin biodeconstruction.

摘要

生物塑料解构与升级回收已成为传统塑料垃圾回收技术的可持续替代方案。高效热稳定聚对苯二甲酸乙二酯(PET)水解酶的发现与工程化使得大规模生物PET回收成为可能;然而,占所有塑料产量约70%的非PET塑料的酶仍基本未被发现。为加速此类酶的发现,需要一个高通量筛选(HTS)平台。在此,我们开发了一种基于液体的HTS检测方法,以检测聚烯烃降解的首个关键步骤之一,即将C-H键氧化为醛。我们在氧化的低密度聚乙烯(LDPE)薄膜上测试了4-肼基-7-硝基-2,1,3-苯并恶二唑肼(NBD-H),它与生成的醛反应形成荧光腙。腙的生成与聚合物氧化的既定羰基指数指标相关性良好(R = 0.97)。此外,我们证明该探针能可靠地识别在LDPE薄膜上产生醛的LDPE活性染料脱色过氧化物酶(DyPs),曲线下面积为0.95的受试者工作特征曲线表明其作为有效筛选方法的有效性。由于在微阵列板中可快速进行荧光读数和平行化操作,与耗时的既定方法相比,该检测方法能在24小时内筛选数千种酶,加速了催化聚烯烃生物解构第一步的酶的发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/00a5092eeaf8/nihpp-2025.07.23.666384v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/fc092ba0fc9a/nihpp-2025.07.23.666384v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/d5572e8fb7bf/nihpp-2025.07.23.666384v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/6a81355b9694/nihpp-2025.07.23.666384v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/da667830f266/nihpp-2025.07.23.666384v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/480c48803ed3/nihpp-2025.07.23.666384v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/00a5092eeaf8/nihpp-2025.07.23.666384v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/fc092ba0fc9a/nihpp-2025.07.23.666384v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/d5572e8fb7bf/nihpp-2025.07.23.666384v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/6a81355b9694/nihpp-2025.07.23.666384v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/da667830f266/nihpp-2025.07.23.666384v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/480c48803ed3/nihpp-2025.07.23.666384v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1de5/12330763/00a5092eeaf8/nihpp-2025.07.23.666384v1-f0006.jpg

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本文引用的文献

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