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青霉来源的乳酸脱氢酶抑制剂(PfLDH):新型抗疟治疗药物研发的计算方法

Penicillium-Derived Inhibitors of Lactate Dehydrogenase (PfLDH): A Computational Approach for Novel Antimalarial Therapy Development.

作者信息

Sama-Ae Imran, Muengthongon Pimthip, Tohlaeh Azeezah, Rukhachan Watcharaphon, Kiattikul Pawika, Samaeng Fathiyah, Mitklin Aritsara, Rahman Md Atiar, Tedasen Aman, Kwankaew Pattamaporn, Kotepui Manas, Kepan Anirut

机构信息

Department of Medical Technology, School of Allied Health Sciences, Walailak University, Tha Sala District, Nakhon Si Thammarat, Thailand.

Center of Excellence Research for Melioidosis and Microorganisms (CERMM), Walailak University, Tha Sala District, Nakhon Si Thammarat, Thailand.

出版信息

Scientifica (Cairo). 2025 Aug 4;2025:8838031. doi: 10.1155/sci5/8838031. eCollection 2025.

DOI:10.1155/sci5/8838031
PMID:40791280
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12339158/
Abstract

Malaria remains a major global health challenge, necessitating the discovery of novel therapeutic agents. This study investigates secondary metabolites from spp. as potential inhibitors of lactate dehydrogenase (PfLDH), a critical enzyme in the parasite's glycolytic pathway. A curated library of -derived compounds underwent drug-likeness and toxicity screening, resulting in the identification of 42 viable candidates. Molecular docking simulations revealed three promising compounds-Penicilactone B, Penicillimide, and Penicillisocoumarin A-with binding affinities exceeding those of the positive controls, NADH, and pyruvate. Among these, Penicilactone B exhibited the strongest binding affinity (-8.71 kcal/mol) and the lowest inhibitory constant (414.77 nM). Molecular dynamics simulations confirmed the stability of these compounds within the PfLDH binding pocket over a 200-ns trajectory, with Penicilactone B demonstrating the most stable interactions. Off-target predictions suggested minimal interaction with human lactate dehydrogenase, indicating a potentially favorable safety profile. Penicilactone B emerged as the most promising candidate due to its molecular stability, efficient binding, and favorable solvent interactions. Penicillisocoumarin A also showed potential, supported by its pharmacokinetic properties and safety indicators. These findings highlight the potential of penicillium-derived secondary metabolites as a promising source for novel antimalarial therapies targeting PfLDH. Future research should focus on experimental validation, pharmacokinetic optimization, and efficacy testing against diverse strains.

摘要

疟疾仍然是一项重大的全球卫生挑战,因此需要发现新型治疗药物。本研究调查了来自[具体菌种]的次生代谢产物作为疟原虫乳酸脱氢酶(PfLDH)潜在抑制剂的可能性,PfLDH是疟原虫糖酵解途径中的一种关键酶。一个经过精心整理的源自[具体菌种]的化合物库进行了类药性和毒性筛选,结果鉴定出42个可行的候选物。分子对接模拟揭示了三种有前景的化合物——青霉内酯B、青霉酰亚胺和青霉异香豆素A,它们的结合亲和力超过了阳性对照物烟酰胺腺嘌呤二核苷酸(NADH)和丙酮酸。其中,青霉内酯B表现出最强的结合亲和力(-8.71千卡/摩尔)和最低的抑制常数(414.77纳摩尔)。分子动力学模拟证实了这些化合物在200纳秒的轨迹内于PfLDH结合口袋中的稳定性,青霉内酯B表现出最稳定的相互作用。脱靶预测表明与人类乳酸脱氢酶的相互作用最小,这表明其具有潜在良好的安全性。由于其分子稳定性、有效结合和良好的溶剂相互作用,青霉内酯B成为最有前景的候选物。青霉异香豆素A因其药代动力学性质和安全指标也显示出潜力。这些发现突出了源自青霉的次生代谢产物作为针对PfLDH的新型抗疟疗法的有前景来源的潜力。未来的研究应集中在实验验证、药代动力学优化以及针对不同疟原虫菌株的疗效测试上。

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