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通过利用Julia的建模工具包和自动微分来提高光谱动态因果模型的灵活性和速度。

Increasing spectral DCM flexibility and speed by leveraging Julia's ModelingToolkit and automated differentiation.

作者信息

Hofmann David, Chesebro Anthony G, Rackauckas Chris, Mujica-Parodi Lilianne R, Friston Karl J, Edelman Alan, Strey Helmut H

机构信息

Laufer Center for Physical and Quantitative Biology, State University of New York at Stony Brook, Stony Brook, NY, United States.

Computer Science and Artificial Intelligence Lab, Massachusetts Institute of Technology, Cambridge, MA, United States.

出版信息

Imaging Neurosci (Camb). 2025 Jul 24;3. doi: 10.1162/IMAG.a.88. eCollection 2025.

Abstract

Using neuroimaging and electrophysiological data to infer neural parameter estimations from theoretical circuits requires solving the inverse problem. Here, we provide a new Julia language package designed to i) compose complex dynamical models in a simple and modular way with ModelingToolkit.jl, ii) implement parameter fitting based on spectral dynamic causal modeling (sDCM) using the Laplace approximation, analogous to MATLAB implementation in SPM, and iii) leverage Julia's unique strengths to increase accuracy and speed by employing Automatic Differentiation during the fitting procedure. To illustrate the utility of our flexible modular approach, we provide a method to improve correction for fMRI scanner field strengths (1.5T, 3T, 7T) when fitting models to real data.

摘要

使用神经成像和电生理数据从理论电路推断神经参数估计需要解决逆问题。在这里,我们提供了一个新的Julia语言包,旨在:i)使用ModelingToolkit.jl以简单且模块化的方式构建复杂的动力学模型;ii)基于谱动态因果模型(sDCM),使用拉普拉斯近似实现参数拟合,类似于SPM中的MATLAB实现;iii)利用Julia的独特优势,在拟合过程中采用自动微分来提高准确性和速度。为了说明我们灵活的模块化方法的实用性,我们提供了一种在将模型拟合到实际数据时改进对功能磁共振成像(fMRI)扫描仪场强(1.5T、3T、7T)校正的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f7d/12330849/1d2f13a6d601/IMAG.a.88_Fig1.jpg

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