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气相苯 - 甲醇二聚体构型:几何结构、相对稳定性和相互作用能

Gas-Phase Benzene-Methanol Dimer Configurations: Geometries, Relative Stabilities, and Interaction Energies.

作者信息

Kirschner Karl N

机构信息

Department of Computer Science and the Institute of Technology, Resource and Energy-Efficient Engineering (TREE), University of Applied Sciences Bonn-Rhein-Sieg, Grantham-Allee 20, Sankt Augustin 53757, Germany.

出版信息

J Phys Chem A. 2025 Sep 4;129(35):8110-8119. doi: 10.1021/acs.jpca.5c03923. Epub 2025 Aug 23.

DOI:10.1021/acs.jpca.5c03923
PMID:40848014
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12416377/
Abstract

The benzene···methanol dimer is one of the simplest systems that manifests an O-H···π nonbonded interaction. This interaction can be found in numerous systems, ranging from small-molecule clusters to biological systems, for example, phenyl-containing ligands bound within a protein's binding pocket. Herein, four gas-phase configurations are examined using quantum mechanics, which have O-H···π, CH···π and Bz-H···O interactions. Geometry optimization and frequency calculations were performed up to the MP2/aug-cc-pVQZ theory level, with electronic energies obtained up to the CCSD(T)/complete basis set (CBS) limit. Considering the electronic energy (Δ), the O-H···π configuration is the most stable, with a CCSD(T)/CBS (counterpoise corrected) interaction energy of -4.09 kcal mol, while the other three configurations ranged from -2.00 to -2.60 kcal mol. Using scaled harmonic frequencies, the temperature influence was investigated by computing Gibbs relative and interaction free energies over a 10-800 K temperature range.

摘要

苯···甲醇二聚体是表现出O-H···π非键相互作用的最简单体系之一。这种相互作用在许多体系中都能找到,从小分子团簇到生物体系,例如,蛋白质结合口袋内结合的含苯基配体。本文使用量子力学研究了四种气相构型,它们具有O-H···π、CH···π和Bz-H···O相互作用。在MP2/aug-cc-pVQZ理论水平上进行了几何优化和频率计算,并在CCSD(T)/完全基组(CBS)极限下获得了电子能量。考虑到电子能量(Δ),O-H···π构型最稳定,其CCSD(T)/CBS(经基组重叠误差校正)相互作用能为-4.09 kcal/mol,而其他三种构型的相互作用能在-2.00至-2.60 kcal/mol之间。使用缩放后的谐波频率,通过计算10 - 800 K温度范围内的吉布斯相对自由能和相互作用自由能来研究温度的影响。

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本文引用的文献

1
Strong structuring arising from weak cooperative O-H···π and C-H···O hydrogen bonding in benzene-methanol solution.苯 - 甲醇溶液中由弱协同O - H···π和C - H···O氢键产生的强结构。
Nat Commun. 2023 Sep 22;14(1):5900. doi: 10.1038/s41467-023-41451-y.
2
Transfer Learning to CCSD(T): Accurate Anharmonic Frequencies from Machine Learning Models.迁移学习至 CCSD(T):从机器学习模型中获得准确的非谐频率。
J Chem Theory Comput. 2021 Jun 8;17(6):3687-3699. doi: 10.1021/acs.jctc.1c00249. Epub 2021 May 7.
3
Array programming with NumPy.使用 NumPy 进行数组编程。
Nature. 2020 Sep;585(7825):357-362. doi: 10.1038/s41586-020-2649-2. Epub 2020 Sep 16.
4
SciPy 1.0: fundamental algorithms for scientific computing in Python.SciPy 1.0:Python 中的科学计算基础算法。
Nat Methods. 2020 Mar;17(3):261-272. doi: 10.1038/s41592-019-0686-2. Epub 2020 Feb 3.
5
Non-covalent interaction of benzene with methanol and diethyl ether solid surfaces.苯与甲醇和乙醚固体表面的非共价相互作用。
Phys Chem Chem Phys. 2016 Jul 27;18(30):20790-801. doi: 10.1039/c6cp01787h.
6
Accuracy and Efficiency of Coupled-Cluster Theory Using Density Fitting/Cholesky Decomposition, Frozen Natural Orbitals, and a t1-Transformed Hamiltonian.使用密度拟合/Cholesky分解、冻结自然轨道和t1变换哈密顿量的耦合簇理论的准确性和效率
J Chem Theory Comput. 2013 Jun 11;9(6):2687-96. doi: 10.1021/ct400250u. Epub 2013 May 10.
7
Erratum to "S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures".《“S66:与生物分子结构相关的基准相互作用能的平衡数据库”》勘误
J Chem Theory Comput. 2014 Mar 11;10(3):1359-60. doi: 10.1021/ct5000692.
8
Symmetrizer: algorithmic determination of point groups in nearly symmetric molecules.对称化:近对称分子中点群的算法确定。
J Comput Chem. 2012 Jul 15;33(19):1637-42. doi: 10.1002/jcc.22995. Epub 2012 May 2.
9
Coordination of methanol clusters to benzene: a computational study.甲醇簇与苯的配位:计算研究。
J Phys Chem A. 2011 Sep 29;115(38):10556-64. doi: 10.1021/jp206248w. Epub 2011 Sep 1.
10
S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures.S66:与生物分子结构相关的基准相互作用能的平衡数据库。
J Chem Theory Comput. 2011 Aug 9;7(8):2427-2438. doi: 10.1021/ct2002946. Epub 2011 Jul 1.