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通过自动算法设计与配置,使用分数阶齐纳模型对人骨肉瘤癌细胞系MG-63进行粘弹性表征。

Viscoelastic characterization of the human osteosarcoma cancer cell line MG-63 using a fractional-order zener model through automated algorithm design and configuration.

作者信息

Duque-Gimenez Grecia C, Zambrano-Gutierrez Daniel F, Rodriguez-Nieto Maricela, Menchaca Jorge Luis, Cruz-Duarte Jorge M, Zárate-Triviño Diana G, Avina-Cervantes Juan Gabriel, Ortiz-Bayliss José Carlos

机构信息

Centro de Investigación en Ciencias Físico Matemáticas, Facultad de Ciencias Físico Matemáticas, Universidad Autónoma de Nuevo León, 66450, San Nicolás de los Garza, Nuevo León, Mexico.

School of Engineering and Sciences, Tecnologico de Monterrey, 64700, Monterrey, Nuevo León, Mexico.

出版信息

Sci Rep. 2025 Aug 26;15(1):31436. doi: 10.1038/s41598-025-16174-3.

DOI:10.1038/s41598-025-16174-3
PMID:40858862
Abstract

Understanding the viscoelastic properties of cells is essential for studying their mechanical behavior and identifying disease-related biomechanical markers. This paper proposes an integrated framework that combines fractional modeling with automated algorithm design to fit force-relaxation data acquired through atomic force microscopy. We employ the fractional-order zener model to describe cell relaxation curves and formulate the parameter estimation as a black-box optimization problem. To solve it, we implement a Randomized Constructive Hyper-Heuristic with Local Search (RCHH-LS) that automatically generates tailored metaheuristics (MHs) by exploring combinations of search operators. Our results show that the best-performing MH, composed of two swarm-based dynamics and a local random-walk operator ([Formula: see text]), achieves a performance of [Formula: see text], representing a 75% improvement over the mean of all candidate configurations. Subsequent hyperparameter tuning with Optuna reduces this value to [Formula: see text], a further 4.7% gain relative to the untuned version while preserving high stability and repeatability. In an evaluation of 21 instances (force-relaxation curves), the tuned [Formula: see text] provided the best result in 19 cases, achieving an average of [Formula: see text], about 12% better than the best two-operator alternative and a coefficient of variation below 0.01%, underscoring its generalization capability. The FOZ model fitted using this solver generalizes well to independent datasets and captures critical viscoelastic parameters. We also confirm that [Formula: see text], τ, and α are sensitive to the applied force via a statistical analysis, while [Formula: see text] remains stable, reinforcing its association with intrinsic cell properties. These results highlight the effectiveness of combining fractional viscoelastic modeling with automated MH design for robust and interpretable mechanical characterization of cells. The proposed approach reduces manual intervention, ensures generalizability, and offers a scalable solution for computational biomechanics.

摘要

了解细胞的粘弹性特性对于研究其力学行为和识别疾病相关的生物力学标志物至关重要。本文提出了一个综合框架,将分数阶建模与自动算法设计相结合,以拟合通过原子力显微镜获得的力松弛数据。我们采用分数阶齐纳模型来描述细胞松弛曲线,并将参数估计表述为一个黑箱优化问题。为了解决这个问题,我们实现了一种带有局部搜索的随机构造超启发式算法(RCHH-LS),该算法通过探索搜索算子的组合来自动生成定制的元启发式算法(MHs)。我们的结果表明,性能最佳的MH由两种基于群体的动力学和一个局部随机游走算子([公式:见原文])组成,其性能达到了[公式:见原文],比所有候选配置的平均值提高了75%。随后使用Optuna进行超参数调整将该值降低到了[公式:见原文],相对于未调整版本又提高了4.7%,同时保持了高稳定性和可重复性。在对21个实例(力松弛曲线)的评估中,调整后的[公式:见原文]在19个案例中提供了最佳结果,平均达到了[公式:见原文],比最佳的双算子替代方案高出约12%,变异系数低于0.01%,突出了其泛化能力。使用该求解器拟合的分数阶齐纳(FOZ)模型能够很好地推广到独立数据集,并捕捉到关键的粘弹性参数。我们还通过统计分析证实,[公式:见原文]、τ和α对所施加的力敏感,而[公式:见原文]保持稳定,加强了其与细胞固有特性的关联。这些结果突出了将分数阶粘弹性建模与自动MH设计相结合用于细胞稳健且可解释的力学表征的有效性。所提出的方法减少了人工干预,确保了泛化性,并为计算生物力学提供了一种可扩展的解决方案。

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本文引用的文献

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Microrheological comparison of melanoma cells by atomic force microscopy.原子力显微镜下黑色素瘤细胞的微流变比较。
J Biol Phys. 2024 Mar;50(1):55-69. doi: 10.1007/s10867-023-09648-w. Epub 2024 Jan 19.
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Investigating malignancy-dependent mechanical properties of breast cancer cells.研究乳腺癌细胞的恶性依赖性机械特性。
Annu Int Conf IEEE Eng Med Biol Soc. 2023 Jul;2023:1-4. doi: 10.1109/EMBC40787.2023.10340235.
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Morphometric and Nanomechanical Screening of Peripheral Blood Cells with Atomic Force Microscopy for Label-Free Assessment of Alzheimer's Disease, Parkinson's Disease, and Amyotrophic Lateral Sclerosis.采用原子力显微镜对外周血细胞进行形态计量学和纳米力学筛选,用于阿尔茨海默病、帕金森病和肌萎缩性侧索硬化症的无标记评估。
Int J Mol Sci. 2023 Sep 19;24(18):14296. doi: 10.3390/ijms241814296.
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Advances in mechanical biomarkers.机械生物标志物的研究进展。
J Mol Recognit. 2023 Aug;36(8):e3022. doi: 10.1002/jmr.3022. Epub 2023 Jun 8.
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Methodologies and models for measuring viscoelastic properties of cancer cells: Towards a universal classification.测量癌细胞粘弹性特性的方法和模型:迈向通用分类
J Mech Behav Biomed Mater. 2023 Apr;140:105734. doi: 10.1016/j.jmbbm.2023.105734. Epub 2023 Feb 20.
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