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咖啡因对伊马替尼结合的调节作用:一项针对CYP3A4的分子对接研究

Modulatory Effects of Caffeine on Imatinib Binding: A Molecular Docking Study Targeting CYP3A4.

作者信息

Amzoiu Manuel-Ovidiu, Popescu Georgeta Sofia, Amzoiu Emilia, Ciocîlteu Maria Viorica, Manda Costel Valentin, Rau Gabriela, Gresita Andrei, Taisescu Oana

机构信息

Faculty of Pharmacy, University of Medicine and Pharmacy of Craiova, 200638 Craiova, Romania.

Faculty of Food Eng, University of Life Science "King Michael" from Timisoara, 300645 Timisoara, Romania.

出版信息

Life (Basel). 2025 Aug 6;15(8):1247. doi: 10.3390/life15081247.

DOI:10.3390/life15081247
PMID:40868895
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12387622/
Abstract

Caffeine is a widely consumed psychoactive compound known to influence drug metabolism and efficacy through interactions with key enzymes such as cytochrome P450 3A4 (CYP3A4). This study investigates the molecular impact of caffeine on the binding behavior of imatinib, a first-line BCR-ABL tyrosine kinase inhibitor, using molecular docking simulations. Structural optimization and lipophilicity analyses were conducted using HyperChem, while docking was performed with HEX software (Version 8.0.0) against the CYP3A4 receptor (PDB ID: 1W0E). Two administration scenarios were evaluated: concurrent caffeine-imatinib complex formation and sequential administration with caffeine pre-bound to CYP3A4. The caffeine-imatinib complex exhibited a predicted increase in lipophilicity (logP = 3.09) compared to imatinib alone (logP = -1.29), which may indicate the potential for enhanced membrane permeability and tissue distribution. Docking simulations revealed stronger binding affinity of the complex to CYP3A4 (-350.53 kcal/mol) compared to individual compounds, and improved imatinib binding when CYP3A4 was pre-complexed with caffeine (-294.14 kcal/mol vs. -288.19 kcal/mol). Frontier molecular orbital analysis indicated increased reactivity of the complex (ΔE = 7.74 eV), supporting the hypothesis of altered pharmacodynamic behavior. These findings suggest that caffeine may modulate imatinib's metabolic profile and therapeutic efficacy by enhancing receptor binding and altering drug distribution. The study underscores the importance of evaluating dietary components during drug development and therapeutic planning, particularly for agents metabolized by CYP3A4.

摘要

咖啡因是一种广泛消费的精神活性化合物,已知它通过与细胞色素P450 3A4(CYP3A4)等关键酶相互作用来影响药物代谢和疗效。本研究使用分子对接模拟研究了咖啡因对伊马替尼(一种一线BCR-ABL酪氨酸激酶抑制剂)结合行为的分子影响。使用HyperChem进行结构优化和亲脂性分析,同时使用HEX软件(版本8.0.0)针对CYP3A4受体(PDB ID:1W0E)进行对接。评估了两种给药方案:同时形成咖啡因 - 伊马替尼复合物以及先将咖啡因预结合到CYP3A4上再进行顺序给药。与单独的伊马替尼(logP = -1.29)相比,咖啡因 - 伊马替尼复合物的亲脂性预计增加(logP = 3.09),这可能表明其膜通透性和组织分布增强的潜力。对接模拟显示,与单个化合物相比,该复合物与CYP3A4的结合亲和力更强(-350.53 kcal/mol),并且当CYP3A4与咖啡因预复合时,伊马替尼的结合有所改善(-294.14 kcal/mol对-288.19 kcal/mol)。前沿分子轨道分析表明复合物的反应性增加(ΔE = 7.74 eV),支持了药效学行为改变的假设。这些发现表明,咖啡因可能通过增强受体结合和改变药物分布来调节伊马替尼的代谢谱和治疗效果。该研究强调了在药物开发和治疗规划过程中评估饮食成分的重要性,特别是对于由CYP3A4代谢的药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7829/12387622/49fef5395bba/life-15-01247-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7829/12387622/fd1e40c2d619/life-15-01247-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7829/12387622/e4579706929f/life-15-01247-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7829/12387622/49fef5395bba/life-15-01247-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7829/12387622/fd1e40c2d619/life-15-01247-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7829/12387622/e4579706929f/life-15-01247-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7829/12387622/49fef5395bba/life-15-01247-g003.jpg

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本文引用的文献

1
Caffeine: A Multifunctional Efficacious Molecule with Diverse Health Implications and Emerging Delivery Systems.咖啡因:一种具有多种功效的多功能有效分子,具有多种健康影响和新兴的输送系统。
Int J Mol Sci. 2024 Nov 8;25(22):12003. doi: 10.3390/ijms252212003.
2
Molecular docking as a tool for the discovery of molecular targets of nutraceuticals in diseases management.分子对接作为一种工具,用于发现疾病管理中营养保健品的分子靶标。
Sci Rep. 2023 Aug 17;13(1):13398. doi: 10.1038/s41598-023-40160-2.
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Interaction of CYP3A4 with caffeine: First insights into multiple substrate binding.
CYP3A4 与咖啡因的相互作用:对多种底物结合的初步了解。
J Biol Chem. 2023 Sep;299(9):105117. doi: 10.1016/j.jbc.2023.105117. Epub 2023 Jul 29.
4
Synergistic Effects of Caffeine in Combination with Conventional Drugs: Perspectives of a Drug That Never Ages.咖啡因与传统药物联合使用的协同效应:一种永不过时药物的前景。
Pharmaceuticals (Basel). 2023 May 11;16(5):730. doi: 10.3390/ph16050730.
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Caffeine consumption and withdrawal among patients in the intensive care unit.重症监护病房患者的咖啡因摄入和戒断。
Aust Crit Care. 2024 May;37(3):436-440. doi: 10.1016/j.aucc.2023.03.004. Epub 2023 Apr 27.
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Does Drinking Coffee Reduce the Incidence of Parkinson's Disease?喝咖啡能降低帕金森病的发病率吗?
Cureus. 2023 Jan 27;15(1):e34296. doi: 10.7759/cureus.34296. eCollection 2023 Jan.
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RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.RCSB 蛋白质数据库(RCSB.org):提供实验测定的 PDB 结构以及来自人工智能/机器学习的 100 万个蛋白质计算结构模型。
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Coffee-Derived Phenolic Compounds Activate Nrf2 Antioxidant Pathway in I/R Injury In Vitro Model: A Nutritional Approach Preventing Age Related-Damages.咖啡来源的酚类化合物在体内再灌注损伤模型中激活 Nrf2 抗氧化途径:一种预防与年龄相关损伤的营养方法。
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Caffeine and Parkinson's Disease: Multiple Benefits and Emerging Mechanisms.咖啡因与帕金森病:多重益处及新出现的机制
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