Meléndez-Aranda Lennon, Moreno Pereyda Jazmin, Romero-Prado Marina M J
Departamento de Bioinformática, Centro de Investigación y Desarrollo Científico del Occidente de México, Centro de Investigación y Desarrollo Cientìfico del Occidente de Mexico (CIDCOM), Guadalajara C. P. 44270, Mexico.
Hospital INTER-HOSP, S. A. DE C. V. calle Tuxpan No. 25, Col. Roma Sur, Ciudad de México C. P. 06760, Mexico.
Genes (Basel). 2025 Jul 30;16(8):916. doi: 10.3390/genes16080916.
: Adducins are cytoskeletal proteins essential for membrane stability, actin-spectrin network organization, and cell signaling. Mutations in the genes , , and have been linked to hypertension, neurodevelopmental disorders, and cancer. However, no comprehensive in silico saturation mutagenesis study has systematically evaluated the pathogenic potential and structural consequences of all possible missense mutations in adducins. This study aimed to identify high-risk variants and their potential impact on protein stability and function. : We performed computational saturation mutagenesis for all possible single amino acid substitutions across the adducin proteins family. Pathogenicity predictions were conducted using four independent tools: AlphaMissense, Rhapsody, PolyPhen-2, and PMut. Predictions were validated against UniProt-annotated pathogenic variants. Predictive performance was assessed using Cohen's Kappa, sensitivity, and precision. Mutations with a prediction probability ≥ 0.8 were further analyzed for structural stability using mCSM, DynaMut2, MutPred2, and Missense3D, with particular focus on functionally relevant domains such as phosphorylation and calmodulin-binding sites. : PMut identified the highest number of pathogenic mutations, while PolyPhen-2 yielded more conservative predictions. Several high-risk mutations clustered in known regulatory and binding regions. Substitutions involving glycine were consistently among the most destabilizing due to increased backbone flexibility. Validated variants showed strong agreement across multiple tools, supporting the robustness of the analysis. : This study highlights the utility of multi-tool bioinformatic strategies for comprehensive mutation profiling. The results provide a prioritized list of high-impact adducin variants for future experimental validation and offer insights into potential therapeutic targets for disorders involving , , and mutations.
内收蛋白是对膜稳定性、肌动蛋白-血影蛋白网络组织和细胞信号传导至关重要的细胞骨架蛋白。基因、和中的突变与高血压、神经发育障碍和癌症有关。然而,尚无全面的计算机饱和诱变研究系统评估内收蛋白中所有可能的错义突变的致病潜力和结构后果。本研究旨在识别高风险变异及其对蛋白质稳定性和功能的潜在影响。:我们对整个内收蛋白家族所有可能的单氨基酸替换进行了计算饱和诱变。使用四种独立工具进行致病性预测:AlphaMissense、Rhapsody、PolyPhen-2和PMut。根据UniProt注释的致病变异对预测进行验证。使用科恩kappa系数、敏感性和精确性评估预测性能。预测概率≥0.8的突变使用mCSM、DynaMut2、MutPred2和Missense3D进一步分析其结构稳定性,特别关注功能相关结构域,如磷酸化和钙调蛋白结合位点。:PMut识别出的致病突变数量最多,而PolyPhen-2产生的预测更为保守。几个高风险突变聚集在已知的调节和结合区域。由于主链灵活性增加,涉及甘氨酸的替换始终是最不稳定的。经过验证的变异在多个工具之间显示出很强的一致性,支持了分析的稳健性。:本研究强调了多工具生物信息学策略在全面突变分析中的实用性。结果提供了一份高影响内收蛋白变异的优先列表,以供未来实验验证,并为涉及、和突变的疾病的潜在治疗靶点提供了见解。