• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

批量和单细胞RNA测序数据的机器学习整合揭示了结直肠癌中的糖酵解异质性。

Machine learning integration of bulk and single-cell RNA-seq data reveals glycolytic heterogeneity in colorectal cancer.

作者信息

Du Yuanyuan, Miao Zefeng, Li Peng, Feng Dan, Liu Mulin, Ji Aifang, Li Shijun

机构信息

College of Laboratory Medicine, Dalian Medical University, Dalian, 116044, Liaoning, China.

Department of Laboratory Medicine, Heping Hospital Affiliated to Changzhi Medical College, Changzhi, 046000, Shanxi, China.

出版信息

Med Oncol. 2025 Aug 30;42(10):458. doi: 10.1007/s12032-025-03007-6.

DOI:10.1007/s12032-025-03007-6
PMID:40884604
Abstract

As one of the most prevalent malignancies worldwide, colorectal cancer (CRC) exhibits a strong metabolic dependency on glycolysis, which fuels tumor expansion and shapes an immunosuppressive microenvironment. Despite its clinical significance, the regulatory landscape and cellular diversity of glycolytic metabolism in CRC require systematic exploration. Multi-omics datasets (bulk/scRNA-seq and spatial transcriptomics) were analyzed to quantify glycolytic signatures. Core regulatory genes were selected via integrated pathway mapping and a machine learning framework incorporating five-feature selection algorithms. Cellular subpopulations were delineated by metabolic profiles, with niche interactions modeled through ligand-receptor network analysis. Findings were validated across multicenter cohorts. Our analyses identified a tumor subpopulation characterized by a High Glycolytic State (HGS), displaying elevated glycolytic signature alongside stem-like properties. Spatial profiling demonstrated relative enrichment of HGS cells in central tumor regions, potentially reflecting adaptation to nutrient-limited conditions. Among the molecular features associated with HGS maintenance, five candidate regulators (PFKP, ERO1A, FKBP4, HDLBP, HSPA5) showed correlation with unfavorable clinical outcomes. Our study characterizes the metabolic heterogeneity of CRC and suggests a potential role for HGS cells in shaping the tumor microenvironment. The molecular features identified here may offer insights into metabolic dependencies that could be explored for future therapeutic targeting.

摘要

作为全球最常见的恶性肿瘤之一,结直肠癌(CRC)对糖酵解表现出强烈的代谢依赖性,糖酵解为肿瘤扩张提供能量并塑造免疫抑制微环境。尽管其具有临床意义,但CRC中糖酵解代谢的调控格局和细胞多样性仍需要系统探索。分析多组学数据集(批量/单细胞RNA测序和空间转录组学)以量化糖酵解特征。通过整合通路映射和包含五种特征选择算法的机器学习框架选择核心调控基因。通过代谢谱描绘细胞亚群,通过配体-受体网络分析对生态位相互作用进行建模。研究结果在多中心队列中得到验证。我们的分析确定了一个以高糖酵解状态(HGS)为特征的肿瘤亚群,其糖酵解特征升高并具有干细胞样特性。空间分析表明HGS细胞在肿瘤中心区域相对富集,这可能反映了对营养受限条件的适应。在与HGS维持相关的分子特征中,五个候选调节因子(PFKP、ERO1A、FKBP4、HDLBP、HSPA5)与不良临床结果相关。我们的研究描述了CRC的代谢异质性,并表明HGS细胞在塑造肿瘤微环境中可能发挥的作用。此处确定的分子特征可能为代谢依赖性提供见解,可为未来的治疗靶点探索提供参考。

相似文献

1
Machine learning integration of bulk and single-cell RNA-seq data reveals glycolytic heterogeneity in colorectal cancer.批量和单细胞RNA测序数据的机器学习整合揭示了结直肠癌中的糖酵解异质性。
Med Oncol. 2025 Aug 30;42(10):458. doi: 10.1007/s12032-025-03007-6.
2
Spatial transcriptomics and scRNA-seq: decoding tumor complexity and constructing prognostic models in colorectal cancer.空间转录组学与单细胞RNA测序:解析结直肠癌的肿瘤复杂性并构建预后模型
Hum Genomics. 2025 Aug 13;19(1):92. doi: 10.1186/s40246-025-00805-x.
3
Integrated single-cell and transcriptomic analysis of bone marrow-derived metastatic neuroblastoma reveals molecular mechanisms of metabolic reprogramming.骨髓源性转移性神经母细胞瘤的单细胞与转录组学整合分析揭示代谢重编程的分子机制。
Sci Rep. 2025 Aug 5;15(1):28519. doi: 10.1038/s41598-025-13626-8.
4
Integrated Single-Cell RNA-Seq Reveals Immunosuppressive Mechanisms of Treg Cell Differentiation and Tumor Microenvironment Interactions in Colorectal Cancer.整合单细胞RNA测序揭示了结直肠癌中调节性T细胞分化的免疫抑制机制及肿瘤微环境相互作用
Cancer Med. 2025 Sep;14(17):e71202. doi: 10.1002/cam4.71202.
5
Integrating spatial and single-cell transcriptomics reveals tumor heterogeneity and intercellular networks in colorectal cancer.整合空间转录组和单细胞转录组揭示结直肠癌肿瘤异质性和细胞间网络。
Cell Death Dis. 2024 May 10;15(5):326. doi: 10.1038/s41419-024-06598-6.
6
Single-cell technology reveals the crosstalk between tumor cells and immune cells: driving immune signal transduction and inflammation-mediated cardiac dysfunction in the tumor microenvironment of colorectal cancer.单细胞技术揭示肿瘤细胞与免疫细胞间的串扰:驱动免疫信号转导及炎症介导的结直肠癌肿瘤微环境中的心脏功能障碍
Front Immunol. 2025 Aug 6;16:1637144. doi: 10.3389/fimmu.2025.1637144. eCollection 2025.
7
Diversity of mast cell subpopulations in the tumor microenvironment of colorectal cancer and their prognostic implications.结直肠癌肿瘤微环境中肥大细胞亚群的多样性及其预后意义。
Cancer Immunol Immunother. 2025 Jun 30;74(8):255. doi: 10.1007/s00262-025-04119-8.
8
Multi-omics analysis reveals the role of ribosome biogenesis in malignant clear cell renal cell carcinoma and the development of a machine learning-based prognostic model.多组学分析揭示核糖体生物合成在恶性透明细胞肾细胞癌中的作用以及基于机器学习的预后模型的开发。
Front Immunol. 2025 Jun 26;16:1602898. doi: 10.3389/fimmu.2025.1602898. eCollection 2025.
9
Cross-cohort multi-omics analysis identifies novel clusters driven by EMT signatures in colorectal cancer.跨队列多组学分析识别出由结直肠癌中上皮-间质转化特征驱动的新集群。
Front Immunol. 2025 Jun 12;16:1628005. doi: 10.3389/fimmu.2025.1628005. eCollection 2025.
10
Multi-omics profiling identifies TNFRSF18 as a novel marker of exhausted CD8⁺ T cells and reveals tumour-immune dynamics in colorectal cancer.多组学分析确定TNFRSF18为耗竭性CD8⁺T细胞的新型标志物,并揭示了结直肠癌中的肿瘤-免疫动态。
Clin Transl Med. 2025 Aug;15(8):e70425. doi: 10.1002/ctm2.70425.

本文引用的文献

1
FKBP4 promotes glycolysis and hepatocellular carcinoma progression via p53/HK2 axis.FKBP4 通过 p53/HK2 轴促进糖酵解和肝细胞癌进展。
Sci Rep. 2024 Nov 6;14(1):26893. doi: 10.1038/s41598-024-78383-6.
2
Local TSH/TSHR signaling promotes CD8 T cell exhaustion and immune evasion in colorectal carcinoma.局部 TSH/TSHR 信号促进结直肠癌中 CD8 T 细胞耗竭和免疫逃逸。
Cancer Commun (Lond). 2024 Nov;44(11):1287-1310. doi: 10.1002/cac2.12605. Epub 2024 Sep 16.
3
Involvement of tumor immune microenvironment metabolic reprogramming in colorectal cancer progression, immune escape, and response to immunotherapy.
肿瘤免疫微环境代谢重编程在结直肠癌进展、免疫逃逸和免疫治疗反应中的作用。
Front Immunol. 2024 Jul 25;15:1353787. doi: 10.3389/fimmu.2024.1353787. eCollection 2024.
4
MCT1-dependent lactate recycling is a metabolic vulnerability in colorectal cancer cells upon acquired resistance to anti-EGFR targeted therapy.MCT1 依赖性乳酸循环是结直肠癌细胞获得抗 EGFR 靶向治疗耐药后的代谢脆弱性。
Cancer Lett. 2024 Aug 28;598:217091. doi: 10.1016/j.canlet.2024.217091. Epub 2024 Jul 2.
5
Machine learning algorithms integrate bulk and single-cell RNA data to unveil oxidative stress following intracerebral hemorrhage.机器学习算法整合批量和单细胞 RNA 数据,揭示脑出血后的氧化应激。
Int Immunopharmacol. 2024 Aug 20;137:112449. doi: 10.1016/j.intimp.2024.112449. Epub 2024 Jun 11.
6
MYG1 drives glycolysis and colorectal cancer development through nuclear-mitochondrial collaboration.MYG1 通过核-线粒体协作驱动糖酵解和结直肠癌细胞发展。
Nat Commun. 2024 Jun 11;15(1):4969. doi: 10.1038/s41467-024-49221-0.
7
Comprehensive Proteogenomic Profiling Reveals the Molecular Characteristics of Colorectal Cancer at Distinct Stages of Progression.综合蛋白质基因组学分析揭示了不同进展阶段结直肠癌的分子特征。
Cancer Res. 2024 Sep 4;84(17):2888-2910. doi: 10.1158/0008-5472.CAN-23-1878.
8
Integration RNA bulk and single cell RNA sequencing to explore the change of glycolysis-related immune microenvironment and construct prognostic signature in head and neck squamous cell carcinoma.整合RNA批量测序和单细胞RNA测序以探索头颈部鳞状细胞癌中糖酵解相关免疫微环境的变化并构建预后特征
Transl Oncol. 2024 Aug;46:102021. doi: 10.1016/j.tranon.2024.102021. Epub 2024 Jun 7.
9
M2 Tumor-Associated Macrophages-Derived Exosomal MALAT1 Promotes Glycolysis and Gastric Cancer Progression.M2 肿瘤相关巨噬细胞衍生的外泌体 MALAT1 促进糖酵解和胃癌进展。
Adv Sci (Weinh). 2024 Jun;11(24):e2309298. doi: 10.1002/advs.202309298. Epub 2024 Apr 19.
10
Global cancer statistics 2022: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.2022 年全球癌症统计数据:全球 185 个国家和地区 36 种癌症的发病率和死亡率全球估计数。
CA Cancer J Clin. 2024 May-Jun;74(3):229-263. doi: 10.3322/caac.21834. Epub 2024 Apr 4.