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珊瑚珊瑚虫纲特异性视蛋白利用一种新型氯离子抗衡离子进行光谱调谐。

Coral anthozoan-specific opsins employ a novel chloride counterion for spectral tuning.

作者信息

Sakai Yusuke, Sen Saumik, Sugihara Tomohiro, Kakeyama Yukiya, Iwasaki Makoto, Schertler Gebhard F X, Deupi Xavier, Koyanagi Mitsumasa, Terakita Akihisa

机构信息

Department of Biology, Graduate School of Science, Osaka Metropolitan University, Sumiyoshi ku, Osaka, Japan.

Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.

出版信息

Elife. 2025 Sep 1;14:RP105451. doi: 10.7554/eLife.105451.

Abstract

Animal opsins are G protein-coupled receptors that have evolved to sense light by covalently binding a retinal chromophore via a protonated (positively charged) Schiff base. A negatively charged amino acid in the opsin, acting as a counterion, stabilizes the proton on the Schiff base, which is essential for sensitivity to visible light. In this study, we investigate the spectroscopic properties of a unique class of opsins from a reef-building coral belonging to the anthozoan-specific opsin II group (ASO-II opsins), which intriguingly lack a counterion residue at any of established sites. Our findings reveal that, unlike other known animal opsins, the protonated state of the Schiff base in visible light-sensitive ASO-II opsins is highly dependent on exogenously supplied chloride ions (Cl). By using structural modeling and quantum mechanics/molecular mechanics (QM/MM) calculations to interpret spectroscopy data, we conclude that, in the dark state, ASO-II opsins employ environmental Cl as their native counterion, while a nearby polar residue, Glu292 in its protonated neutral form, facilitates Cl binding. In contrast, Glu292 plays a crucial role in maintaining the protonation state of the Schiff base in the light-activated protein, serving as the counterion in the photoproduct. Furthermore, Glu292 is involved in G protein activation of the ASO-II opsin, suggesting that this novel counterion system coordinates multiple functional properties.

摘要

动物视蛋白是G蛋白偶联受体,通过经由质子化(带正电荷)席夫碱共价结合视黄醛发色团而进化出感知光的能力。视蛋白中带负电荷的氨基酸作为抗衡离子,稳定席夫碱上的质子,这对于对可见光的敏感性至关重要。在本研究中,我们研究了一类独特的视蛋白的光谱特性,这类视蛋白来自属于珊瑚虫特异性视蛋白II组(ASO-II视蛋白)的造礁珊瑚,有趣的是,在任何已确定的位点都没有抗衡离子残基。我们的研究结果表明,与其他已知的动物视蛋白不同,对可见光敏感的ASO-II视蛋白中席夫碱的质子化状态高度依赖于外源提供的氯离子(Cl)。通过使用结构建模和量子力学/分子力学(QM/MM)计算来解释光谱数据,我们得出结论,在黑暗状态下,ASO-II视蛋白利用环境中的Cl作为其天然抗衡离子,而附近一个质子化中性形式的极性残基Glu292促进Cl的结合。相比之下,Glu292在维持光激活蛋白中席夫碱的质子化状态方面起着关键作用,在光产物中作为抗衡离子。此外,Glu292参与了ASO-II视蛋白的G蛋白激活,这表明这种新型抗衡离子系统协调了多种功能特性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7de4/12401545/8982b483aa83/elife-105451-fig1.jpg

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