Sakai Yusuke, Sen Saumik, Sugihara Tomohiro, Kakeyama Yukiya, Iwasaki Makoto, Schertler Gebhard F X, Deupi Xavier, Koyanagi Mitsumasa, Terakita Akihisa
Department of Biology, Graduate School of Science, Osaka Metropolitan University, Sumiyoshi ku, Osaka, Japan.
Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.
Elife. 2025 Sep 1;14:RP105451. doi: 10.7554/eLife.105451.
Animal opsins are G protein-coupled receptors that have evolved to sense light by covalently binding a retinal chromophore via a protonated (positively charged) Schiff base. A negatively charged amino acid in the opsin, acting as a counterion, stabilizes the proton on the Schiff base, which is essential for sensitivity to visible light. In this study, we investigate the spectroscopic properties of a unique class of opsins from a reef-building coral belonging to the anthozoan-specific opsin II group (ASO-II opsins), which intriguingly lack a counterion residue at any of established sites. Our findings reveal that, unlike other known animal opsins, the protonated state of the Schiff base in visible light-sensitive ASO-II opsins is highly dependent on exogenously supplied chloride ions (Cl). By using structural modeling and quantum mechanics/molecular mechanics (QM/MM) calculations to interpret spectroscopy data, we conclude that, in the dark state, ASO-II opsins employ environmental Cl as their native counterion, while a nearby polar residue, Glu292 in its protonated neutral form, facilitates Cl binding. In contrast, Glu292 plays a crucial role in maintaining the protonation state of the Schiff base in the light-activated protein, serving as the counterion in the photoproduct. Furthermore, Glu292 is involved in G protein activation of the ASO-II opsin, suggesting that this novel counterion system coordinates multiple functional properties.
动物视蛋白是G蛋白偶联受体,通过经由质子化(带正电荷)席夫碱共价结合视黄醛发色团而进化出感知光的能力。视蛋白中带负电荷的氨基酸作为抗衡离子,稳定席夫碱上的质子,这对于对可见光的敏感性至关重要。在本研究中,我们研究了一类独特的视蛋白的光谱特性,这类视蛋白来自属于珊瑚虫特异性视蛋白II组(ASO-II视蛋白)的造礁珊瑚,有趣的是,在任何已确定的位点都没有抗衡离子残基。我们的研究结果表明,与其他已知的动物视蛋白不同,对可见光敏感的ASO-II视蛋白中席夫碱的质子化状态高度依赖于外源提供的氯离子(Cl)。通过使用结构建模和量子力学/分子力学(QM/MM)计算来解释光谱数据,我们得出结论,在黑暗状态下,ASO-II视蛋白利用环境中的Cl作为其天然抗衡离子,而附近一个质子化中性形式的极性残基Glu292促进Cl的结合。相比之下,Glu292在维持光激活蛋白中席夫碱的质子化状态方面起着关键作用,在光产物中作为抗衡离子。此外,Glu292参与了ASO-II视蛋白的G蛋白激活,这表明这种新型抗衡离子系统协调了多种功能特性。