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富含质体营养的农业微生物群落的宏转录组概况

Metatranscriptome profile of agricultural microbial communities enriched for plastitrophy.

作者信息

Olabemiwo Fatai A, Huang Yuting, Thompson Macy, Omar Hanan, Kalra Siddhant, Arevalo Philip, Nazzaro Valerie, Cohan Frederick M

机构信息

Department of Biology Wesleyan University Middletown Connecticut USA.

College of Integrative Science Wesleyan University Middletown Connecticut USA.

出版信息

mLife. 2025 Jul 28;4(4):465-469. doi: 10.1002/mlf2.70023. eCollection 2025 Aug.

DOI:10.1002/mlf2.70023
PMID:40893971
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12396202/
Abstract

This study identified potential plastic-degrading microorganisms and enzymes in agricultural soils using a novel two-phase enrichment approach. By culturing agricultural soil in a Winogradsky column supplemented with polyethylene (PE) sheets, followed by culture in minimal medium with low-density polyethylene (LDPE) microplastic, we identified 192 genes specifically upregulated in LDPE conditions, including 10 genes encoding known plastizymes and 182 genes encoding putative plastic-degrading enzymes. Detailed enzyme classification revealed predominant roles for oxygenases (20%) and dehydrogenases (19%), with specific subclasses showing distinct distribution patterns. These findings expand our understanding of microbial responses to plastics in agricultural environments and provide a foundation for developing bioremediation strategies to address plastic contamination in soils.

摘要

本研究采用一种新型的两相富集方法,在农业土壤中鉴定出潜在的塑料降解微生物和酶。通过在补充了聚乙烯(PE)片材的维诺格拉茨基柱中培养农业土壤,随后在含有低密度聚乙烯(LDPE)微塑料的基本培养基中培养,我们鉴定出192个在LDPE条件下特异性上调的基因,其中包括10个编码已知塑料酶的基因和182个编码推定塑料降解酶的基因。详细的酶分类显示加氧酶(20%)和脱氢酶(19%)起主要作用,特定亚类呈现出不同的分布模式。这些发现扩展了我们对农业环境中微生物对塑料反应的理解,并为制定生物修复策略以解决土壤中的塑料污染提供了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef09/12396202/fcfbfb9a5503/MLF2-4-465-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef09/12396202/fcfbfb9a5503/MLF2-4-465-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef09/12396202/fcfbfb9a5503/MLF2-4-465-g001.jpg

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本文引用的文献

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Isolation of a polyethylene-degrading bacterium, , using a novel screening method based on a redox indicator.利用基于氧化还原指示剂的新型筛选方法分离聚乙烯降解细菌,。 (你提供的原文“Isolation of a polyethylene-degrading bacterium,,”似乎不完整,这里是按照现有内容翻译的。)
Heliyon. 2023 Apr 25;9(5):e15731. doi: 10.1016/j.heliyon.2023.e15731. eCollection 2023 May.
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PlasticDB: a database of microorganisms and proteins linked to plastic biodegradation.塑料数据库(PlasticDB):一个与塑料生物降解相关的微生物和蛋白质数据库。
Database (Oxford). 2022 Mar 1;2022. doi: 10.1093/database/baac008.
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Micro- and nano-plastics in edible fruit and vegetables. The first diet risks assessment for the general population.
食用果蔬中的微塑料和纳米塑料。一般人群的首次饮食风险评估。
Environ Res. 2020 Aug;187:109677. doi: 10.1016/j.envres.2020.109677. Epub 2020 May 20.
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Front Microbiol. 2020 Feb 13;11:114. doi: 10.3389/fmicb.2020.00114. eCollection 2020.
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Biochemical properties and biotechnological applications of microbial enzymes involved in the degradation of polyester-type plastics.参与聚酯型塑料降解的微生物酶的生化特性及生物技术应用。
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Plastics: Environmental and Biotechnological Perspectives on Microbial Degradation.塑料:微生物降解的环境和生物技术视角。
Appl Environ Microbiol. 2019 Sep 17;85(19). doi: 10.1128/AEM.01095-19. Print 2019 Oct 1.
7
Biodegradation of oil-based plastics in the environment: Existing knowledge and needs of research and innovation.环境中石油基塑料的生物降解:现有知识以及研究与创新的需求。
Sci Total Environ. 2019 Aug 20;679:148-158. doi: 10.1016/j.scitotenv.2019.04.419. Epub 2019 May 4.
8
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An overview of microplastic and nanoplastic pollution in agroecosystems.农业生态系统中微塑料和纳米塑料污染概述。
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