Pseudoduganella rhizocola sp. nov., Isolated from Rhizospheric Soil.

A novel bacterial strain, SM-13 was isolated from the rhizospheric soil of Epipremnum aureum (Jade Pothos) sampled in Suwon, Republic of Korea. The isolate was Gram-stain-negative, aerobic, motile, rod-shaped, cream-coloured, oxidase- and catalase-positive. Strain SM-13 grew at the range of 15-37 °C (optimum, 25 °C), at pH 6.0-9.0 (optimum, pH 7.0), and in the presence of 0-0.5% (w/v) NaCl (optimum, 0%). Phylogenetic analysis based on genome and 16S rRNA gene sequences indicated that strain SM-13 was affiliated with the family Oxalobacteriaceae and most closely related to Pseudoduganella humi THG S6-8 (97.8%), Pseudoduganella violacea CAVIO (97.7%), Pseudoduganella buxea A9 (97.6%), Pseudoduganella dura 16 (97.5%), Pseudoduganella umbonata LP01 (97.5%), and Pseudoduganella lurida D5 (97.4%). The major ubiquinone was Q-8. The major identified polar lipids were phosphatidylethanolamine (PE), phosphatidylglycerol (PG), diphosphatidylglycerol (DPG), amino lipids (AL), and unknown lipids (L1, L2). The major fatty acids of SM-13 were summed feature 3 (C ω7c/C ω6c) (51.9%) and C (18.7%). The novel strain SM-13 has a draft genome size of 5,401,088 bp (27 contigs), annotated with 4,880 protein-coding genes, 59 tRNA and 2 rRNA genes. The genomic DNA G + C (%) content was 64. Hence, the strain SM-13 represent a novel species within the genus Pseudoduganella, for which the name Pseudoduganella rhizocola sp. nov. is proposed. The Type strain is SM-13 (= KCTC 8734 = TBRC 19389 = KEMB 24220). The GenBank/EMBL/DDBJ accession number for the complete 16S rRNA gene and genome sequence of the type strain SM-13 is PQ198503 and JBJQIK000000000.