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溶液中聚(dA-dT)的磷酸二酯主链具有交替构象。

An alternating conformation characterizes the phosphodiester backbone of poly(dA-dT) in solution.

作者信息

Shindo H, Simpson R T, Cohen J S

出版信息

J Biol Chem. 1979 Sep 10;254(17):8125-8.

PMID:468810
Abstract

A highly homogeneous 145-base-pair fragment of double helical poly(dA-dT) . poly(dA-dT) was obtained by micrococcal nuclease digestion of a semisynthetic chromatin prepared from the nucleosome core histones (H2A, H2B, H3, H4) and the synthetic polydeoxyribonucleotide. In contrast to higher molecular weight alternating copolymers, this fragment displayed two resolved 31P NMR signals, separated by 24 Hz at 10.93 MHz. The two signals were of equal intensity at all temperatures less than the Tm for the fragment. Analyses of the possible origins for the two reasonances leads to the conclusion that the phosphodiester backbone of this DNA contains two distinct phosphorus environments, probably in an alternating array. We suggest that this may indicate the presence of sequence-dependent local variation in the helical structure of DNA in general.

摘要

通过微球菌核酸酶消化由核小体核心组蛋白(H2A、H2B、H3、H4)和合成多脱氧核糖核苷酸制备的半合成染色质,获得了高度均一的145个碱基对的双螺旋聚(dA-dT)·聚(dA-dT)片段。与高分子量交替共聚物不同,该片段显示出两个分辨的31P NMR信号,在10.93 MHz时相隔24 Hz。在低于该片段熔点的所有温度下,这两个信号强度相等。对这两个共振可能来源的分析得出结论,该DNA的磷酸二酯主链包含两个不同的磷环境,可能呈交替排列。我们认为,这可能总体上表明DNA螺旋结构中存在序列依赖性局部变化。

相似文献

1
An alternating conformation characterizes the phosphodiester backbone of poly(dA-dT) in solution.溶液中聚(dA-dT)的磷酸二酯主链具有交替构象。
J Biol Chem. 1979 Sep 10;254(17):8125-8.
2
Conformation of DNA in chromatin core particles containing poly(dAdT)-poly(dAdT) studied by 31 P NMR spectroscopy.通过31P核磁共振光谱研究含聚(dAdT)-聚(dAdT)的染色质核心颗粒中DNA的构象。
Nucleic Acids Res. 1979 Sep 25;7(2):481-92. doi: 10.1093/nar/7.2.481.
3
Geometry of the phosphodiester backbone in the A form of deoxyribonucleic acid determined by phosphorus-31 nuclear magnetic resonance spectroscopy.通过磷-31核磁共振光谱法测定的脱氧核糖核酸A形式中磷酸二酯主链的几何结构。
Biochemistry. 1981 Feb 17;20(4):745-50. doi: 10.1021/bi00507a013.
4
Conformation of 145 base pair length poly (dG-dC) . poly (dG-dC) in solution and in association with histones.溶液中及与组蛋白结合时145个碱基对长度的聚(dG-dC)。聚(dG-dC)的构象
Nucleic Acids Res. 1980 May 10;8(9):2093-103. doi: 10.1093/nar/8.9.2093.
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Conformational variability of poly(dA-dT).poly(dA-dT) and some other deoxyribonucleic acids includes a novel type of double helix.聚(dA-dT)·聚(dA-dT)及其他一些脱氧核糖核酸的构象变异性包括一种新型双螺旋结构。
J Biomol Struct Dyn. 1985 Aug;3(1):67-83. doi: 10.1080/07391102.1985.10508399.
6
Characterization of alternating deoxyribonucleic acid conformations in solution by phosphorus-31 nuclear magnetic resonance spectroscopy.用磷-31核磁共振光谱法表征溶液中交替脱氧核糖核酸构象
Biochemistry. 1981 May 26;20(11):3049-55. doi: 10.1021/bi00514a010.
7
Right-handed alternating DNA conformation: poly(dA-dT) adopts the same dinucleotide repeat with cesium, tetraalkylammonium, and 3 alpha, 5 beta, 17 beta-dipyrrolidinium steroid dimethiodide cations in aqueous solution.右手交替DNA构象:在水溶液中,聚(dA-dT)与铯、四烷基铵和3α,5β,17β-二吡咯烷鎓甾体二甲碘化物阳离子采用相同的二核苷酸重复序列。
Proc Natl Acad Sci U S A. 1981 Jul;78(7):4063-7. doi: 10.1073/pnas.78.7.4063.
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Nucleosome cores reconstituted from poly (dA-dT) and the octamer of histones.由聚(dA-dT)和组蛋白八聚体重构的核小体核心。
Nucleic Acids Res. 1979;6(5):1805-16. doi: 10.1093/nar/6.5.1805.
9
Use of phosphorothioate analogs of poly(dA-dT).poly(dAdT) to study steroidal-diamine induced conformational change in poly(dA-dT).poly(dA-dT).使用聚(dA-dT)·聚(dA-dT)的硫代磷酸酯类似物来研究甾体二胺诱导的聚(dA-dT)·聚(dA-dT)构象变化。
FEBS Lett. 1985 Sep 9;189(1):77-80. doi: 10.1016/0014-5793(85)80845-0.
10
Studies on synthetic chromatins containing poly(dA-dT) X poly(dA-dT) and poly(dG-dC) X poly(dG-dC).关于含有聚(dA-dT)×聚(dA-dT)和聚(dG-dC)×聚(dG-dC)的合成染色质的研究。
Biochim Biophys Acta. 1983 Jan 20;739(1):85-96. doi: 10.1016/0167-4781(83)90048-9.

引用本文的文献

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Conformational properties of DNA strands containing guanine-adenine and thymine-adenine repeats.含有鸟嘌呤-腺嘌呤和胸腺嘧啶-腺嘌呤重复序列的DNA链的构象特性。
Nucleic Acids Res. 1998 Mar 15;26(6):1509-14. doi: 10.1093/nar/26.6.1509.
2
Salt-induced conformational changes of poly(dA-dT).盐诱导的聚(dA-dT)构象变化。
Nucleic Acids Res. 1980 Sep 11;8(17):3965-73. doi: 10.1093/nar/8.17.3965.
3
Conformation of 145 base pair length poly (dG-dC) . poly (dG-dC) in solution and in association with histones.溶液中及与组蛋白结合时145个碱基对长度的聚(dG-dC)。聚(dG-dC)的构象
Nucleic Acids Res. 1980 May 10;8(9):2093-103. doi: 10.1093/nar/8.9.2093.
4
Conformational transitions of poly(dA-dT)poly(dA-dT) in ethanolic solutions.聚(dA-dT)聚(dA-dT)在乙醇溶液中的构象转变。
Nucleic Acids Res. 1982 Nov 11;10(21):6969-79. doi: 10.1093/nar/10.21.6969.
5
Right-handed alternating DNA conformation: poly(dA-dT) adopts the same dinucleotide repeat with cesium, tetraalkylammonium, and 3 alpha, 5 beta, 17 beta-dipyrrolidinium steroid dimethiodide cations in aqueous solution.右手交替DNA构象:在水溶液中,聚(dA-dT)与铯、四烷基铵和3α,5β,17β-二吡咯烷鎓甾体二甲碘化物阳离子采用相同的二核苷酸重复序列。
Proc Natl Acad Sci U S A. 1981 Jul;78(7):4063-7. doi: 10.1073/pnas.78.7.4063.
6
Nitroaniline diamine.poly(dA-dT) complexes: 1H and 19F NMR parameters for full intercalation of aromatic rings into DNA.硝基苯胺二胺.聚(dA-dT)复合物:芳环完全插入DNA的1H和19F NMR参数
Proc Natl Acad Sci U S A. 1981 Mar;78(3):1351-5. doi: 10.1073/pnas.78.3.1351.
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Molecular structure of an anticancer drug-DNA complex: daunomycin plus d(CpGpTpApCpG).一种抗癌药物 - DNA 复合物的分子结构:柔红霉素加 d(CpGpTpApCpG)
Proc Natl Acad Sci U S A. 1980 Dec;77(12):7204-8. doi: 10.1073/pnas.77.12.7204.
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