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酿酒酵母中的转运RNA剪接:确定底物

Transfer RNA splicing in Saccharomyces cerevisiae: defining the substrates.

作者信息

Ogden R C, Lee M C, Knapp G

出版信息

Nucleic Acids Res. 1984 Dec 21;12(24):9367-82. doi: 10.1093/nar/12.24.9367.

DOI:10.1093/nar/12.24.9367
PMID:6096826
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC320467/
Abstract

The primary sequences of all the tRNA precursors which contain intervening sequences and which accumulate in the Saccharomyces cerevisiae rnal mutant are presented. A combination of DNA and RNA sequence analysis has led to elucidation of the primary sequence of four hitherto uncharacterized precursors. The location of the intervening sequence has in all cases been unambiguously determined by analysis of the intermediates in the splicing reaction. Secondary structures based upon the tRNA cloverleaf are shown for all the tRNA precursors and discussed with respect to common recognition by the yeast splicing endonuclease.

摘要

本文列出了所有含有居间序列并在酿酒酵母rna突变体中积累的trna前体的一级序列。DNA和RNA序列分析相结合,阐明了四种迄今未被表征的前体的一级序列。通过对剪接反应中间体的分析,在所有情况下都明确确定了居间序列的位置。展示了所有trna前体基于trna三叶草结构的二级结构,并就酵母剪接内切核酸酶的共同识别进行了讨论。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d94e/320467/33bd997a3bb6/nar00342-0152-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d94e/320467/7592024c4ff2/nar00342-0148-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d94e/320467/33bd997a3bb6/nar00342-0152-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d94e/320467/7592024c4ff2/nar00342-0148-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d94e/320467/33bd997a3bb6/nar00342-0152-a.jpg

相似文献

1
Transfer RNA splicing in Saccharomyces cerevisiae: defining the substrates.酿酒酵母中的转运RNA剪接:确定底物
Nucleic Acids Res. 1984 Dec 21;12(24):9367-82. doi: 10.1093/nar/12.24.9367.
2
Exon sequence and structure requirements for tRNA splicing in Saccharomyces cerevisiae.酿酒酵母中tRNA剪接的外显子序列和结构要求。
Biochemistry. 1992 Mar 3;31(8):2359-67. doi: 10.1021/bi00123a022.
3
Splicing of yeast tRNA precursors: structure of the reaction intermediates.酵母tRNA前体的剪接:反应中间体的结构
Cell. 1979 Sep;18(1):37-45. doi: 10.1016/0092-8674(79)90351-9.
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Splicing of yeast tRNA precursors: a two-stage reaction.酵母tRNA前体的剪接:一个两阶段反应。
Cell. 1979 Sep;18(1):27-35. doi: 10.1016/0092-8674(79)90350-7.
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Cytoplasmic splicing of tRNA in Saccharomyces cerevisiae.酿酒酵母中转运RNA的细胞质剪接
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Transcription and processing of a tRNA gene containing an intervening sequence.一个含有居间序列的tRNA基因的转录与加工
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Structure of a yeast non-initiating methionine-tRNA gene.酵母非起始甲硫氨酸转运RNA基因的结构
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Directed deletion of a yeast transfer RNA intervening sequence.酵母转移RNA间隔序列的定向缺失
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Substrate recognition and identification of splice sites by the tRNA-splicing endonuclease and ligase from Saccharomyces cerevisiae.酿酒酵母中tRNA剪接内切核酸酶和连接酶对剪接位点的底物识别与鉴定
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Transcription and processing of a yeast tRNA gene containing a modified intervening sequence.一个含有修饰性间隔序列的酵母tRNA基因的转录与加工
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引用本文的文献

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Nat Chem Biol. 2025 Sep 12. doi: 10.1038/s41589-025-02025-9.
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Comprehensive analysis of Saccharomyces cerevisiae intron structures in vivo.酿酒酵母体内内含子结构的综合分析。
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Mutations in the anticodon stem of tRNA cause accumulation and Met22-dependent decay of pre-tRNA in yeast.tRNA 反密码子茎突变导致酵母中前 tRNA 的积累和 Met22 依赖性降解。

本文引用的文献

1
Nucleotide sequence of genes coding for tRNAPhe and tRNATyr from a repeating unit of X. laevis DNA.来自非洲爪蟾DNA重复单元的编码苯丙氨酸tRNA和酪氨酸tRNA的基因的核苷酸序列。
Cell. 1980 Feb;19(2):345-53. doi: 10.1016/0092-8674(80)90509-7.
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Transcription initiation of eucaryotic transfer RNA genes.真核生物转运RNA基因的转录起始
Cell. 1982 May;29(1):3-5. doi: 10.1016/0092-8674(82)90083-6.
3
Nucleotide sequence of the SUF2 frameshift suppressor gene of Saccharomyces cerevisiae.酿酒酵母SUF2移码抑制基因的核苷酸序列。
RNA. 2020 Jan;26(1):29-43. doi: 10.1261/rna.073155.119. Epub 2019 Oct 16.
4
Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA.Trm11p和Trm112p都是酵母tRNA中第10位2-甲基鸟苷形成所必需的。
Mol Cell Biol. 2005 Jun;25(11):4359-70. doi: 10.1128/MCB.25.11.4359-4370.2005.
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Characterization of an unusual tRNA-like sequence found inserted in a Neurospora retroplasmid.在粗糙脉孢菌反转录质粒中发现的一个不寻常的类似tRNA序列的特征分析。
Nucleic Acids Res. 2000 Apr 1;28(7):1514-24.
6
Pleiotropic effects of intron removal on base modification pattern of yeast tRNAPhe: an in vitro study.内含子去除对酵母苯丙氨酸转运RNA碱基修饰模式的多效性影响:一项体外研究
Nucleic Acids Res. 1997 Jul 15;25(14):2694-701. doi: 10.1093/nar/25.14.2694.
7
Plant nuclear tRNA(Met) genes are ubiquitously interrupted by introns.植物细胞核中的tRNA(甲硫氨酸)基因普遍被内含子打断。
Plant Mol Biol. 1996 Nov;32(3):427-34. doi: 10.1007/BF00019094.
8
Another heritage from the RNA world: self-excision of intron sequence from nuclear pre-tRNAs.RNA世界的另一个遗产:从细胞核前体tRNA中自我切除内含子序列。
Nucleic Acids Res. 1996 Jun 15;24(12):2212-9. doi: 10.1093/nar/24.12.2212.
9
Yeast nucleoporin mutants are defective in pre-tRNA splicing.酵母核孔蛋白突变体在tRNA前体剪接方面存在缺陷。
Mol Cell Biol. 1996 Jan;16(1):294-301. doi: 10.1128/MCB.16.1.294.
10
Evidence that GCD6 and GCD7, translational regulators of GCN4, are subunits of the guanine nucleotide exchange factor for eIF-2 in Saccharomyces cerevisiae.有证据表明,GCN4的翻译调节因子GCD6和GCD7是酿酒酵母中eIF-2的鸟嘌呤核苷酸交换因子的亚基。
Mol Cell Biol. 1993 Mar;13(3):1920-32. doi: 10.1128/mcb.13.3.1920-1932.1993.
Proc Natl Acad Sci U S A. 1982 Jun;79(11):3565-9. doi: 10.1073/pnas.79.11.3565.
4
Directed deletion of a yeast transfer RNA intervening sequence.酵母转移RNA间隔序列的定向缺失
Science. 1980 Sep 19;209(4463):1396-400. doi: 10.1126/science.6997991.
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Transcription and processing of a yeast tRNA gene containing a modified intervening sequence.一个含有修饰性间隔序列的酵母tRNA基因的转录与加工
Proc Natl Acad Sci U S A. 1980 May;77(5):2564-8. doi: 10.1073/pnas.77.5.2564.
6
Correspondence of yeast UAA suppressors to cloned tRNASerUCA genes.酵母UAA抑制子与克隆的tRNASerUCA基因的对应关系。
J Mol Biol. 1981 Aug 15;150(3):375-87. doi: 10.1016/0022-2836(81)90553-2.
7
Six Schizosaccharomyces pombe tRNA genes including a gene for a tRNALys with an intervening sequence which cannot base-pair with the anticodon.六个粟酒裂殖酵母tRNA基因,包括一个带有间隔序列的tRNALys基因,该间隔序列不能与反密码子进行碱基配对。
Nucleic Acids Res. 1983 Dec 20;11(24):8537-46. doi: 10.1093/nar/11.24.8537.
8
Structure of intron-containing tRNA precursors. Analysis of solution conformation using chemical and enzymatic probes.含内含子的tRNA前体的结构。使用化学和酶促探针分析溶液构象。
J Biol Chem. 1984 Apr 25;259(8):5197-207.
9
The role of non-coding DNA sequences in transcription and processing of a yeast tRNA.非编码DNA序列在酵母tRNA转录和加工中的作用。
Nucleic Acids Res. 1983 Sep 10;11(17):5969-88. doi: 10.1093/nar/11.17.5969.
10
RNA ligase in bacteria: formation of a 2',5' linkage by an E. coli extract.细菌中的RNA连接酶:大肠杆菌提取物形成2',5'-连接。
Cell. 1983 Jul;33(3):899-906. doi: 10.1016/0092-8674(83)90032-6.