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使用链特异性M13探针灵敏检测RNA。

Sensitive detection of RNA using strand-specific M13 probes.

作者信息

Brown D M, Frampton J, Goelet P, Karn J

出版信息

Gene. 1982 Dec;20(2):139-44. doi: 10.1016/0378-1119(82)90032-4.

DOI:10.1016/0378-1119(82)90032-4
PMID:6187624
Abstract

We have extended the method of Hu and Messing (Gene 17 (1982) 271-277) to prepare highly radioactive M13 probes suitable for use in RNA-DNA hybridization experiments. Single strands of M13 DNA carrying cloned sequences are rendered partially double-stranded by primed synthesis using a synthetic oligonucleotide primer complementary to a region 5' to the cloning site. The newly synthesized radioactive complementary strand is then covalently cross-linked to the M13 phage DNA by UV irradiation in the presence of 4,5,8-trimethylpsoralen (trioxsalen). Since the cross-linked probe is stable to heat denaturation, and the region of cloned sequence is kept single-stranded, these complexes may be used as strand-specific hybridization probes to detect RNA sequences under conditions which would denature DNA-DNA duplexes.

摘要

我们扩展了Hu和Messing(《基因》17卷,1982年,271 - 277页)的方法,制备出适用于RNA - DNA杂交实验的高放射性M13探针。携带克隆序列的M13 DNA单链通过使用与克隆位点5'端区域互补的合成寡核苷酸引物进行引物合成,使其部分双链化。然后,在4,5,8 - 三甲基补骨脂素(三甲沙林)存在的情况下,通过紫外线照射将新合成的放射性互补链与M13噬菌体DNA共价交联。由于交联后的探针热变性稳定,且克隆序列区域保持单链状态,这些复合物可用作链特异性杂交探针,在能使DNA - DNA双链变性的条件下检测RNA序列。

相似文献

1
Sensitive detection of RNA using strand-specific M13 probes.使用链特异性M13探针灵敏检测RNA。
Gene. 1982 Dec;20(2):139-44. doi: 10.1016/0378-1119(82)90032-4.
2
Viable deletions of the M13 complementary strand origin.M13互补链起始位点的可行缺失。
Proc Natl Acad Sci U S A. 1981 Nov;78(11):6784-8. doi: 10.1073/pnas.78.11.6784.
3
Screening recombinant phage M13 plaques with RNA probes; a one-step procedure which identifies clones containing either of the complementary DNA strands.用RNA探针筛选重组噬菌体M13噬菌斑;一种一步法程序,可鉴定含有任一互补DNA链的克隆。
Gene. 1984 Jan;27(1):67-73. doi: 10.1016/0378-1119(84)90239-7.
4
The making of strand-specific M13 probes.链特异性M13探针的制备。
Gene. 1982 Mar;17(3):271-7. doi: 10.1016/0378-1119(82)90143-3.
5
M13 vectors for selective cloning of sequences specifying initiation of DNA synthesis on single-stranded templates.用于在单链模板上选择性克隆指定DNA合成起始序列的M13载体。
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Expression of a DNA strand initiation sequence of ColE1 plasmid in a single-stranded DNA phage.ColE1质粒的DNA链起始序列在单链DNA噬菌体中的表达。
Proc Natl Acad Sci U S A. 1980 Nov;77(11):6566-70. doi: 10.1073/pnas.77.11.6566.
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Replication of the plasmid pBR322 under the control of a cloned replication origin from the single-stranded DNA phage M13.在来自单链DNA噬菌体M13的克隆复制起点控制下的质粒pBR322的复制。
Proc Natl Acad Sci U S A. 1980 Aug;77(8):4638-42. doi: 10.1073/pnas.77.8.4638.
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Oligonucleotide-directed mutagenesis using M13-derived vectors: an efficient and general procedure for the production of point mutations in any fragment of DNA.使用M13衍生载体的寡核苷酸定向诱变:在任何DNA片段中产生点突变的高效通用方法。
Nucleic Acids Res. 1982 Oct 25;10(20):6487-500. doi: 10.1093/nar/10.20.6487.
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Using iodinated single-stranded M13 probes to facilitate rapid DNA sequence analysis--nucleotide sequence of a mouse lysine tRNA gene.使用碘化单链M13探针促进快速DNA序列分析——小鼠赖氨酸tRNA基因的核苷酸序列
Nucleic Acids Res. 1983 Apr 11;11(7):2053-64. doi: 10.1093/nar/11.7.2053.
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Mutagenesis of the lac promoter region in M13 mp10 phage DNA by 4'-hydroxymethyl-4,5',8-trimethylpsoralen.4'-羟甲基-4,5',8-三甲基补骨脂素对M13 mp10噬菌体DNA中乳糖启动子区域的诱变作用
Proc Natl Acad Sci U S A. 1985 Nov;82(21):7355-9. doi: 10.1073/pnas.82.21.7355.

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