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核小体DNA的超螺旋性改变了其双螺旋重复序列。

Superhelicity of nucleosomal DNA changes its double-helical repeat.

作者信息

Ulanovsky L E, Trifonov E N

出版信息

Cell Biophys. 1983 Dec;5(4):281-3. doi: 10.1007/BF02788626.

DOI:10.1007/BF02788626
PMID:6202413
Abstract

Winding DNA in a superhelix can be considered a process consisting of two smooth deformations: bending and twisting. The extra twist angle introduced by winding DNA into the nucleosomal superhelix is calculated by means of the Crick formula to be -0.5 degrees per base pair (bp). This is equivalent to a change of -0.15 +/- 0.015 bp in the DNA double-helical repeat. Free DNA in solution is known to have a helical repeat of 10.55 +/- 0.1 bp. On the other hand, a weighted average of various estimates of the DNA repeat in the nucleosome is 10.38 +/- 0.02. The difference happens to be perfectly accounted for by the superhelicity of the nucleosomal DNA. This implies that the latter is essentially nonconstrained .

摘要

将DNA缠绕成超螺旋可被视为一个由两种平滑变形组成的过程:弯曲和扭转。通过克里克公式计算得出,将DNA缠绕成核小体超螺旋所引入的额外扭转角度为每碱基对(bp)-0.5度。这相当于DNA双螺旋重复序列中-0.15±0.015 bp的变化。已知溶液中的游离DNA具有10.55±0.1 bp的螺旋重复序列。另一方面,核小体中DNA重复序列的各种估计值的加权平均值为10.38±0.02。这个差异恰好可以由核小体DNA的超螺旋度完美解释。这意味着后者本质上是不受约束的。

相似文献

1
Superhelicity of nucleosomal DNA changes its double-helical repeat.核小体DNA的超螺旋性改变了其双螺旋重复序列。
Cell Biophys. 1983 Dec;5(4):281-3. doi: 10.1007/BF02788626.
2
Geometry of the nucleosomal DNA superhelix.核小体DNA超螺旋的几何学
Biophys J. 2008 Aug;95(3):1007-17. doi: 10.1529/biophysj.107.122853. Epub 2008 Apr 18.
3
The effect of the superhelicity on the double helix twist angle in DNA.超螺旋对DNA双螺旋扭转角的影响。
Nucleic Acids Res. 1979 Mar;6(3):983-92. doi: 10.1093/nar/6.3.983.
4
Molecular dynamics simulations of a nucleosome and free DNA.核小体与游离DNA的分子动力学模拟
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Nucleotide sequence-directed mapping of the nucleosomes.核小体的核苷酸序列导向图谱分析
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The influence of tertiary structural restraints on conformational transitions in superhelical DNA.三级结构限制对超螺旋DNA构象转变的影响。
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A defined structure of the 30 nm chromatin fibre which accommodates different nucleosomal repeat lengths.一种可容纳不同核小体重复长度的30纳米染色质纤维的特定结构。
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Helical repeat and linking number of surface-wrapped DNA.表面包裹DNA的螺旋重复数和连环数。
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Dependence of the linking deficiency of supercoiled minichromosomes upon nucleosome distortion.超螺旋微型染色体的连接缺陷对核小体畸变的依赖性。
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Modeling DNA-bending in the nucleosome: role of AA periodicity.在核小体中建模 DNA 弯曲:AA 周期性的作用。
J Phys Chem B. 2011 Jul 7;115(26):8638-44. doi: 10.1021/jp203564q. Epub 2011 Jun 16.
2
Human nucleosomes: special role of CG dinucleotides and Alu-nucleosomes.人类核小体:CG 二核苷酸和 Alu 核小体的特殊作用。
BMC Genomics. 2011 May 31;12(1):273. doi: 10.1186/1471-2164-12-273.
3
Repertoires of the nucleosome-positioning dinucleotides.核小体定位二核苷酸的序列。

本文引用的文献

1
Helical periodicity of DNA, Poly(dA) . poly(dT) and poly(dA-dT). poly(dA-dT) in solution.溶液中DNA、聚(dA)·聚(dT)和聚(dA-dT)·聚(dA-dT)的螺旋周期性。
Eur J Biochem. 1981 Aug;118(2):215-22. doi: 10.1111/j.1432-1033.1981.tb06389.x.
2
Neutron diffraction studies on crystals of nucleosome cores using contrast variation.利用对比变化对核小体核心晶体进行中子衍射研究。
J Mol Biol. 1981 Feb 5;145(4):771-84. doi: 10.1016/0022-2836(81)90314-4.
3
The path of DNA in the nucleosome.核小体中DNA的路径。
PLoS One. 2009 Nov 2;4(11):e7654. doi: 10.1371/journal.pone.0007654.
4
A topological approach to nucleosome structure and dynamics: the linking number paradox and other issues.核小体结构与动力学的拓扑学方法:连环数悖论及其他问题
Biophys J. 1998 May;74(5):2531-44. doi: 10.1016/S0006-3495(98)77961-5.
Cell. 1982 Jul;29(3):724-6. doi: 10.1016/0092-8674(82)90433-0.
4
The pitch of chromatin DNA is reflected in its nucleotide sequence.染色质DNA的螺距反映在其核苷酸序列中。
Proc Natl Acad Sci U S A. 1980 Jul;77(7):3816-20. doi: 10.1073/pnas.77.7.3816.
5
The helical periodicity of DNA on the nucleosome.核小体上DNA的螺旋周期性。
Nucleic Acids Res. 1981 Sep 11;9(17):4267-83. doi: 10.1093/nar/9.17.4267.
6
Sequence dependence of the helical repeat of DNA in solution.溶液中DNA螺旋重复序列的依赖性
Nature. 1981 Jul 23;292(5821):375-8. doi: 10.1038/292375a0.
7
Linking numbers and nucleosomes.连接数与核小体
Proc Natl Acad Sci U S A. 1976 Aug;73(8):2639-43. doi: 10.1073/pnas.73.8.2639.
8
Periodicity of deoxyribonuclease I digestion of chromatin.染色质脱氧核糖核酸酶I消化的周期性
Science. 1979 May 25;204(4395):855-8. doi: 10.1126/science.441739.
9
Noninteger pitch and nuclease sensitivity of chromatin DNA.染色质DNA的非整倍体间距和核酸酶敏感性
Biochemistry. 1979 Feb 6;18(3):454-6. doi: 10.1021/bi00570a011.
10
How many base-pairs per turn does DNA have in solution and in chromatin? Some theoretical calculations.DNA在溶液和染色质中每圈有多少碱基对?一些理论计算。
Proc Natl Acad Sci U S A. 1978 Feb;75(2):640-4. doi: 10.1073/pnas.75.2.640.