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核小体核心的脱氧核糖核酸酶II消化:位点的精确位置和相对暴露程度

DNase II digestion of the nucleosome core: precise locations and relative exposures of sites.

作者信息

Lutter L C

出版信息

Nucleic Acids Res. 1981 Sep 11;9(17):4251-65. doi: 10.1093/nar/9.17.4251.

DOI:10.1093/nar/9.17.4251
PMID:6272201
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC327433/
Abstract

The precise locations and relative exposures of the DNase II-accessible sites in the nucleosome core DNA are determined using techniques previously employed for the enzyme DNase I. It is found that there are a number of similarities between the site exposure patterns for the two enzymes but that in general the DNase II seems to discriminate less among adjacent sites' accessibilities than does DNase I. The two enzymes attack essentially the same positions in the DNA, the average difference between the precise location of the site being less than one-half base for the two enzymes. Such close similarities in the digestion patterns of two enzymes with such different mechanisms of scission show that the patterns reflect the structure of the nucleosome core and not merely the properties of the particular enzyme used.

摘要

利用先前用于脱氧核糖核酸酶I的技术,确定核小体核心DNA中脱氧核糖核酸酶II可及位点的精确位置和相对暴露情况。发现这两种酶的位点暴露模式存在一些相似之处,但一般来说,脱氧核糖核酸酶II在相邻位点可及性之间的区分似乎比脱氧核糖核酸酶I少。这两种酶在DNA上攻击的基本是相同的位置,两种酶位点精确位置的平均差异小于半个碱基。两种具有如此不同切割机制的酶在消化模式上如此紧密的相似性表明,这些模式反映的是核小体核心的结构,而不仅仅是所用特定酶的特性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/500a/327433/ad94936c5f37/nar00410-0055-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/500a/327433/8d91370a1418/nar00410-0051-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/500a/327433/ad94936c5f37/nar00410-0055-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/500a/327433/8d91370a1418/nar00410-0051-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/500a/327433/ad94936c5f37/nar00410-0055-a.jpg

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引用本文的文献

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High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans.在秀丽隐杆线虫的 X 连锁基因启动子中,高核小体占有率被编码。
Genome Res. 2011 Feb;21(2):237-44. doi: 10.1101/gr.115931.110. Epub 2010 Dec 22.
2
Organization of internucleosomal DNA in rat liver chromatin.大鼠肝脏染色质中核小体间DNA的组织形式
EMBO J. 1983;2(1):51-6. doi: 10.1002/j.1460-2075.1983.tb01379.x.
3
DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure.脱氧核糖核酸酶I消化揭示了高阶染色质结构对核小体的交替不对称保护作用。

本文引用的文献

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X-ray diffraction study of a new crystal form of the nucleosome core showing higher resolution.对具有更高分辨率的核小体核心新晶体形式的X射线衍射研究。
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DNase-sensitive sites in nucleosomes. Their relative suspectibilities depend on nuclease used.核小体中的DNA酶敏感位点。它们的相对敏感性取决于所使用的核酸酶。
J Biol Chem. 1977 May 10;252(9):3003-6.
5
DNAase I, DNAase II and staphylococcal nuclease cut at different, yet symmetrically located, sites in the nucleosome core.脱氧核糖核酸酶I、脱氧核糖核酸酶II和葡萄球菌核酸酶在核小体核心中不同但对称分布的位点进行切割。
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A restriction enzyme Tha I from the thermophilic mycoplasma Thermoplasma acidophilum.一种来自嗜热支原体嗜酸热原体的限制酶Tha I。
Nucleic Acids Res. 1978 Jun;5(6):1729-39. doi: 10.1093/nar/5.6.1729.
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Deoxyribonuclease I produces staggered cuts in the DNA of chromatin.
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Kinetic analysis of deoxyribonuclease I cleavages in the nucleosome core: evidence for a DNA superhelix.核小体核心中脱氧核糖核酸酶I切割的动力学分析:DNA超螺旋的证据
J Mol Biol. 1978 Sep 15;124(2):391-420. doi: 10.1016/0022-2836(78)90306-6.
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Core nucleosomes by digestion of reconstructed histone-DNA complexes.通过消化重组的组蛋白-DNA复合物获得核心核小体。
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