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1
Tertiary structure of tRNAPhe. A possible correlation between the structural functional unit of this tRNA and its exonic sequence.苯丙氨酸转运RNA的三级结构。该转运RNA的结构功能单元与其外显子序列之间的可能关联。
Biochem J. 1984 Apr 1;219(1):341-4. doi: 10.1042/bj2190341.
2
A phenylalanine tRNA gene from Neurospora crassa: conservation of secondary structure involving an intervening sequence.来自粗糙脉孢菌的苯丙氨酸转运RNA基因:涉及间隔序列的二级结构保守性
Nucleic Acids Res. 1980 Mar 11;8(5):1033-42. doi: 10.1093/nar/8.5.1033.
3
Acceptor activity of tRNAPhe from yeasts under special conditions of aminoacylation.在特定氨酰化条件下酵母苯丙氨酸转运核糖核酸(tRNAPhe)的受体活性
Mol Biol (Mosk). 1976 Jul-Aug;10(4):663-7.
4
Molecular rulers for measuring RNA structure: sites of crosslinking in chlorambucilyl-phenylalanyl-tRNAPhe (yeast) and chlorambucilyl-pentadecaprolyl-phenylalanyl-tRNAPhe (yeast) intramolecularly crosslinked in aqueous solution.用于测量RNA结构的分子尺:在水溶液中发生分子内交联的苯丁酸氮芥基-苯丙氨酰-tRNAPhe(酵母)和苯丁酸氮芥基-十五聚丙氨酰-苯丙氨酰-tRNAPhe(酵母)中的交联位点。
Proc Natl Acad Sci U S A. 1981 Apr;78(4):2082-5. doi: 10.1073/pnas.78.4.2082.
5
Preparation of oligonucleotides corresponding to the acceptor stem of yeast tRNAPhe and their interaction with yeast ATP(CTP):tRNA nucleotidyltransferase.对应于酵母苯丙氨酸转运核糖核酸受体茎的寡核苷酸的制备及其与酵母ATP(CTP):tRNA核苷酸转移酶的相互作用
Nucleic Acids Res. 1984 Sep 11;12(17):6909-22. doi: 10.1093/nar/12.17.6909.
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Biochimie. 1984 Jun;66(6):483-6. doi: 10.1016/0300-9084(84)90084-1.
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Structural variability of tRNA: small-angle x-ray scattering of the yeast tRNAphe-Escherichia coli tRNAGlu2 complex.转运RNA的结构变异性:酵母苯丙氨酸转运RNA-大肠杆菌谷氨酸转运RNA2复合物的小角X射线散射
Proc Natl Acad Sci U S A. 1982 Oct;79(19):5891-5. doi: 10.1073/pnas.79.19.5891.
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The primary structure of yeast mitochondrial tyrosine tRNA.酵母线粒体酪氨酸转运核糖核酸的一级结构。
FEBS Lett. 1983 Feb 21;152(2):153-6. doi: 10.1016/0014-5793(83)80368-8.
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[Binding of the yeast phenylalanine tRNA with Escherichia coli ribosomes. Effect of the removal of a modified base from the 3'-end of the anticodon on codon-anticodon interaction].[酵母苯丙氨酸tRNA与大肠杆菌核糖体的结合。从反密码子3'-末端去除一个修饰碱基对密码子-反密码子相互作用的影响]
Mol Biol (Mosk). 1984 Nov-Dec;18(6):1486-96.
10
Alterations in post-transcriptional modification of the Y base in phenylalanine tRNA from tumor cells.肿瘤细胞中苯丙氨酸tRNA上Y碱基的转录后修饰变化。
Recent Results Cancer Res. 1983;84:133-45. doi: 10.1007/978-3-642-81947-6_9.

引用本文的文献

1
Pleiotropic effects of intron removal on base modification pattern of yeast tRNAPhe: an in vitro study.内含子去除对酵母苯丙氨酸转运RNA碱基修饰模式的多效性影响:一项体外研究
Nucleic Acids Res. 1997 Jul 15;25(14):2694-701. doi: 10.1093/nar/25.14.2694.

本文引用的文献

1
Correlation of DNA exonic regions with protein structural units in haemoglobin.血红蛋白中DNA外显子区域与蛋白质结构单元的相关性。
Nature. 1981 May 7;291(5810):90-2. doi: 10.1038/291090a0.
2
Secondary and tertiary structural foldings in tRNA. A diagonal plot analysis using the blocked nucleotide scheme.转运RNA中的二级和三级结构折叠。使用封闭核苷酸方案的对角线图分析。
Biochem J. 1982 Aug 1;205(2):457-60. doi: 10.1042/bj2050457.
3
A mammalian mitochondrial serine transfer RNA lacking the "dihydrouridine" loop and stem.一种缺乏“二氢尿嘧啶”环和茎的哺乳动物线粒体丝氨酸转运核糖核酸。
Nucleic Acids Res. 1980 Nov 25;8(22):5213-22. doi: 10.1093/nar/8.22.5213.
4
Compilation of tRNA sequences.转运RNA序列的汇编。
Nucleic Acids Res. 1983 Jan 11;11(1):r1-53.
5
Polynucleotide folding in yeast tRNAPhe: elucidation of short-, medium-, and long-range interactions of sugar-phosphate-sugar backbone and base using a "blocked" nucleotide probe.
Biopolymers. 1982 Oct;21(10):2033-47. doi: 10.1002/bip.360211008.
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Structural domains in proteins and their role in the dynamics of protein function.蛋白质中的结构域及其在蛋白质功能动力学中的作用。
Prog Biophys Mol Biol. 1983;42(1):21-78. doi: 10.1016/0079-6107(83)90003-2.
7
Nucleotide sequences of tobacco chloroplast genes for elongator tRNAMet and tRNAVal (UAC): the tRNAVal (UAC) gene contains a long intron.烟草叶绿体中用于延长因子tRNAMet和tRNAVal(UAC)的核苷酸序列:tRNAVal(UAC)基因包含一个长内含子。
Nucleic Acids Res. 1982 Dec 11;10(23):7511-20. doi: 10.1093/nar/10.23.7511.
8
Structure of yeast phenylalanine tRNA at 3 A resolution.酵母苯丙氨酸tRNA在3埃分辨率下的结构
Nature. 1974 Aug 16;250(467):546-51. doi: 10.1038/250546a0.
9
Yeast phenylalanine transfer RNA: atomic coordinates and torsion angles.酵母苯丙氨酸转运核糖核酸:原子坐标与扭转角
Nucleic Acids Res. 1975 Dec;2(12):2329-41. doi: 10.1093/nar/2.12.2329.
10
Structlre of transfer RNA molecules containing the long variable loop.含有长可变环的转运RNA分子的结构
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苯丙氨酸转运RNA的三级结构。该转运RNA的结构功能单元与其外显子序列之间的可能关联。

Tertiary structure of tRNAPhe. A possible correlation between the structural functional unit of this tRNA and its exonic sequence.

作者信息

Malathi R, Yathindra N

出版信息

Biochem J. 1984 Apr 1;219(1):341-4. doi: 10.1042/bj2190341.

DOI:10.1042/bj2190341
PMID:6562890
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1153485/
Abstract

It has been shown recently [Go (1981) Nature (London) 291, 90-92; Blake (1983) Trends Biochem Sci. 8, 11-13] that the exonic regions of the genes of proteins haemoglobin, lysozyme and immunoglobin correspond closely to the compactly folded structural units. Despite the absence of classical domain structures in tRNA compared with those found in several proteins, close inspection of certain features in the distance maps obtained for yeast tRNAPhe using the conformationally equivalent heminucleotide scheme reveals that a similar situation might also be present in ribonucleic acids such as tRNA species and the exonic sequences of their genes. Also it seems possible that certain segments of yeast tRNAPhe may be characterized as possessing a domain-like character, and this seems to provide stereochemical support for possible conservation of L-shape structure for tRNA species lacking the entire dihydrouridine arm such as those found in mitochondria.

摘要

最近的研究表明[戈(1981年),《自然》(伦敦)291卷,90 - 92页;布莱克(1983年),《生物化学趋势》8卷,11 - 13页],血红蛋白、溶菌酶和免疫球蛋白等蛋白质基因的外显子区域与紧密折叠的结构单元密切对应。尽管与几种蛋白质中的经典结构域结构相比,tRNA中不存在这种结构,但使用构象等效的半核苷酸方案对酵母苯丙氨酸tRNA获得的距离图中的某些特征进行仔细检查后发现,在诸如tRNA种类及其基因的外显子序列等核糖核酸中可能也存在类似情况。此外,酵母苯丙氨酸tRNA的某些片段似乎可能具有类似结构域的特征,这似乎为缺乏完整二氢尿嘧啶臂的tRNA种类(如线粒体中发现的那些)可能保留L形结构提供了立体化学支持。