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海德氏果蝇中热休克基因座2 - 48B的异常结构。

The unusual structure of heat shock locus 2-48B in Drosophila hydei.

作者信息

Peters F P, Lubsen N H, Walldorf U, Moormann R J, Hovemann B

出版信息

Mol Gen Genet. 1984;197(3):392-8. doi: 10.1007/BF00329934.

DOI:10.1007/BF00329934
PMID:6597335
Abstract

We have previously isolated a 500 bp-long cDNA clone, NO9-15, which is derived from a nuclear transcript originating from the heat shock locus 2-48B of Drosophila hydei (Peters et al. 1982). Sequence analysis shows that this clone carries 4 complete copies and 1 partial copy of a 115 bp repeat unit. The repeats are closely homologous with a maximal sequence divergence of about 10%. The sequence does not contain an open reading frame. The genomic organization of heat shock locus 2-48B, as probed with the cloned cDNA sequence NO9-15, is highly polymorphic. Four different allelic arrangements have been found in different inbred strains. A number of genomic clones isolated from region 2-48B, both in phage lambda and in cosmid vectors, all differ in length, mainly due to varying numbers of the NO9-15 repeat unit. These differences are found primarily in the proximal region of the locus. The transcribed region of these clones includes the distal sequence flanking the NO9-15 repeat as well as the NO9-15 repeat itself. An oligo A stretch was found between the distal flanking sequence and the NO9-15 repeat region.

摘要

我们之前分离出了一个500bp长的cDNA克隆,即NO9-15,它源自黑腹果蝇热休克基因座2-48B的一个核转录本(彼得斯等人,1982年)。序列分析表明,该克隆携带了115bp重复单元的4个完整拷贝和1个部分拷贝。这些重复序列高度同源,最大序列差异约为10%。该序列不包含开放阅读框。用克隆的cDNA序列NO9-15探测热休克基因座2-48B的基因组结构,发现其具有高度多态性。在不同的近交系中发现了四种不同的等位基因排列。从2-48B区域分离出的许多基因组克隆,无论是在λ噬菌体还是粘粒载体中,长度都不同,主要是由于NO9-15重复单元的数量不同。这些差异主要出现在基因座的近端区域。这些克隆的转录区域包括NO9-15重复序列侧翼的远端序列以及NO9-15重复序列本身。在远端侧翼序列和NO9-15重复区域之间发现了一段寡聚A序列。

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The unusual structure of heat shock locus 2-48B in Drosophila hydei.海德氏果蝇中热休克基因座2 - 48B的异常结构。
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Heat shock loci 93D of Drosophila melanogaster and 48B of Drosophila hydei exhibit a common structural and transcriptional pattern.黑腹果蝇的热休克基因座93D和海德氏果蝇的48B表现出共同的结构和转录模式。
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引用本文的文献

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Forty years of the 93D puff of Drosophila melanogaster.果蝇 93D 连续喷射 40 年。
J Biosci. 2011 Aug;36(3):399-423. doi: 10.1007/s12038-011-9078-1.
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How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila.真核生物基因组的可塑性如何?果蝇属中染色体重排的极高速率。
Genome Res. 2001 Feb;11(2):230-9. doi: 10.1101/gr.162901.
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The 93D (hsr-omega) locus of Drosophila: non-coding gene with house-keeping functions.果蝇的93D(hsr-omega)基因座:具有管家功能的非编码基因。

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Improvements of DNA sequencing gels.DNA测序凝胶的改进。
Anal Biochem. 1981 Aug;115(2):450-7. doi: 10.1016/0003-2697(81)90031-2.
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Recombination frequency and DNA content of the distal part of the second chromosome of Drosophila hydei Sturtevant.海德果蝇(Drosophila hydei Sturtevant)第二条染色体远端部分的重组频率和DNA含量
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Nucleic Acids Res. 1987 Apr 24;15(8):3317-33. doi: 10.1093/nar/15.8.3317.
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Heat shock locus 93D of Drosophila melanogaster: a spliced RNA most strongly conserved in the intron sequence.黑腹果蝇的热休克基因座93D:一种在内含子序列中保守性最强的剪接RNA。
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Sequence evolution of the Drosophila heat shock locus hsr omega. I. The nonrepeated portion of the gene.果蝇热休克基因座hsr omega的序列进化。I. 基因的非重复部分。
Genetics. 1989 Jun;122(2):403-15. doi: 10.1093/genetics/122.2.403.
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Two major RNA products are transcribed from heat-shock locus 93D of Drosophila melanogaster.从黑腹果蝇的热休克基因座93D转录出两种主要的RNA产物。
Chromosoma. 1985;93(1):17-20. doi: 10.1007/BF01259440.
Eur J Cell Biol. 1983 Jul;31(1):150-7.
4
Heat-shock puff 93 D from Drosophila melanogaster: accumulation of a RNP-specific antigen associated with giant particles of possible storage function.果蝇黑腹果蝇的热休克胀泡93D:一种与可能具有储存功能的大颗粒相关的核糖核蛋白特异性抗原的积累。
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The construction of cosmid libraries which can be used to transform eukaryotic cells.可用于转化真核细胞的黏粒文库的构建。
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Chromosomal arrangement of heat shock locus 2-48B in Drosophila hydei.海德果蝇热休克基因座2 - 48B的染色体排列
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Isolation of cloned genes differentially expressed at early and late stages of Drosophila embryonic development.果蝇胚胎发育早期和晚期差异表达的克隆基因的分离。
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Mobile dispersed genetic element MDG1 of Drosophila melanogaster: structural organization.黑腹果蝇的移动分散遗传元件MDG1:结构组织
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Eucaryotic transposable genetic elements with inverted terminal repeats.具有反向末端重复序列的真核转座遗传元件。
Cell. 1980 Jul;20(3):639-47. doi: 10.1016/0092-8674(80)90310-4.