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[大肠杆菌核糖体RNA 16S的二级结构和拓扑结构]

[Secondary and topographic structure of ribosomal RNA 16S of Escherichia coli].

作者信息

Stiegler P, Carbon P, Zuker M, Ebel J P, Ehresmann C

出版信息

C R Seances Acad Sci D. 1980 Dec 8;291(12):937-40.

PMID:6784944
Abstract

We present a model for the secondary structure of 16S ribosomal RNA from E. coli. This model has been deduced by restricting the total number of theoretical base pairings using the following criteria: (1) susceptibility of residues towards enzymatic probes that are specific for either paired or single stranded regions; (2) reactivity of certain residues to chemical modification; (3) evidence for medium and long range interactions; (4) comparative analysis of ribosomal RNA sequences from other organisms.

摘要

我们提出了一个大肠杆菌16S核糖体RNA二级结构的模型。该模型是通过使用以下标准限制理论碱基配对总数推导出来的：（1）残基对双链或单链区域特异性酶探针的敏感性；（2）某些残基对化学修饰的反应性；（3）中远距离相互作用的证据；（4）其他生物体核糖体RNA序列的比较分析。

相似文献

1
[Secondary and topographic structure of ribosomal RNA 16S of Escherichia coli].[大肠杆菌核糖体RNA 16S的二级结构和拓扑结构]
C R Seances Acad Sci D. 1980 Dec 8;291(12):937-40.
2
Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure.大肠杆菌16S核糖体RNA的结构组织。拓扑结构和二级结构。
Nucleic Acids Res. 1981 May 11;9(9):2153-72. doi: 10.1093/nar/9.9.2153.
3
[Mapping of the 16S rRNA regions in ribosomes capable of complementary binding of oligonucleotides].[能够与寡核苷酸进行互补结合的核糖体中16S rRNA区域的图谱分析]
Biokhimiia. 1981 Dec;46(12):2250-6.
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Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence.细菌16S核糖体RNA的二级结构模型：系统发育、酶学及化学证据
Nucleic Acids Res. 1980 May 24;8(10):2275-93. doi: 10.1093/nar/8.10.2275.
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An experimentally-derived model for the secondary structure of the 16S ribosomal RNA from Escherichia coli.一种通过实验得出的大肠杆菌16S核糖体RNA二级结构模型。
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6
[Role of ribonucleic acids in organizing the structure of Escherichia coli ribosomes].[核糖核酸在大肠杆菌核糖体结构组织中的作用]
Mol Biol (Mosk). 1978 Jul-Aug;12(4):725-36.
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Structure of 4.5S RNA in the signal recognition particle of Escherichia coli as studied by enzymatic and chemical probing.通过酶促和化学探针研究大肠杆菌信号识别颗粒中4.5S RNA的结构
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Universal secondary structures of prokaryotic and eukaryotic ribosomal 5S RNA derived from comparative analysis of their sequences.通过对原核生物和真核生物核糖体5S RNA序列的比较分析得出的通用二级结构。
Acta Biol Med Ger. 1981;40(6):K19-24.
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[Addressed enzymatic fragmentation of RNA molecules].[针对RNA分子的酶促片段化]
Mol Biol (Mosk). 1980;14(1):200-11.
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Conformational analysis of Escherichia coli 30S ribosomes containing the single-base mutations G530U, U1498G, G1401C, and C1501G and the double-base mutation G1401C/C1501G.含有单碱基突变G530U、U1498G、G1401C和C1501G以及双碱基突变G1401C/C1501G的大肠杆菌30S核糖体的构象分析。
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引用本文的文献

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Correlation of RNA secondary structure statistics with thermodynamic stability and applications to folding.RNA二级结构统计与热力学稳定性的相关性及其在折叠中的应用
J Mol Biol. 2009 Aug 28;391(4):769-83. doi: 10.1016/j.jmb.2009.06.036. Epub 2009 Jun 18.
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Evolutionary rates vary among rRNA structural elements.rRNA的各个结构元件的进化速率各不相同。
Nucleic Acids Res. 2007;35(10):3339-54. doi: 10.1093/nar/gkm101. Epub 2007 Apr 27.
3
The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.
比较RNA网站（CRW）：一个关于核糖体RNA、内含子RNA及其他RNA的比较序列和结构信息的在线数据库。
BMC Bioinformatics. 2002;3:2. doi: 10.1186/1471-2105-3-2. Epub 2002 Jan 17.
4
Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species.来自六个不同物种的小亚基核糖体RNA分子之间的二级结构比较。
Nucleic Acids Res. 1981 Aug 11;9(15):3621-40. doi: 10.1093/nar/9.15.3621.
5
Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes.来自大肠杆菌、玉米叶绿体以及人类和小鼠线粒体核糖体的大亚基核糖体RNA的二级结构。
Nucleic Acids Res. 1981 Jul 24;9(14):3287-306. doi: 10.1093/nar/9.14.3287.
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The sequence of the ribosomal 16S RNA from Proteus vulgaris. Sequence comparison with E. coli 16S RNA and its use in secondary model building.普通变形杆菌核糖体16S RNA的序列。与大肠杆菌16S RNA的序列比较及其在二级模型构建中的应用。
Nucleic Acids Res. 1981 May 25;9(10):2325-33. doi: 10.1093/nar/9.10.2325.
7
Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure.大肠杆菌16S核糖体RNA的结构组织。拓扑结构和二级结构。
Nucleic Acids Res. 1981 May 11;9(9):2153-72. doi: 10.1093/nar/9.9.2153.
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The 3'-terminal region of bacterial 23S ribosomal RNA: structure and homology with the 3'-terminal region of eukaryotic 28S rRNA and with chloroplast 4.5s rRNA.细菌23S核糖体RNA的3'末端区域：与真核生物28S rRNA的3'末端区域以及叶绿体4.5s rRNA的结构和同源性。
Nucleic Acids Res. 1981 Apr 10;9(7):1533-49. doi: 10.1093/nar/9.7.1533.
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Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods.识别RNA高阶结构的限制因素：比较序列分析方法的持续发展与应用
Nucleic Acids Res. 1992 Nov 11;20(21):5785-95. doi: 10.1093/nar/20.21.5785.