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1
The electrostatic molecular potential of yeast tRNAPhe. (I). The potential due to the phosphate backbone.酵母苯丙氨酸转运核糖核酸的静电分子势。(I). 磷酸主链产生的势
Nucleic Acids Res. 1980 Mar 11;8(5):1061-79. doi: 10.1093/nar/8.5.1061.
2
A new theoretical index of biochemical reactivity combining steric and electrostatic factors. An application to yeast tRNAPhe.一种结合空间和静电因素的生化反应性新理论指标。应用于酵母苯丙氨酸转运核糖核酸。
Biophys Chem. 1984 Mar;19(2):171-81. doi: 10.1016/0301-4622(84)85017-6.
3
A theoretical study of the effect of structural variations on the biochemical reactivity of yeast tRNAPhe and yeast tRNAAsp.
Biophys Chem. 1985 Jun;22(1-2):1-10. doi: 10.1016/0301-4622(85)80020-x.
4
Splicing of yeast tRNA precursors: structure of the reaction intermediates.酵母tRNA前体的剪接：反应中间体的结构
Cell. 1979 Sep;18(1):37-45. doi: 10.1016/0092-8674(79)90351-9.
5
Magnesium cation induced conformational change of yeast tRNAPhe as studied by singlet-singlet energy transfer.通过单重态-单重态能量转移研究镁阳离子诱导的酵母苯丙氨酸转运核糖核酸的构象变化。
J Biochem. 1983 Dec;94(6):1967-71. doi: 10.1093/oxfordjournals.jbchem.a134550.
6
Binding of bifunctional ethidium intercalators to transfer RNA.双功能溴化乙锭嵌入剂与转运核糖核酸的结合
Biochem Biophys Res Commun. 1982 Feb 26;104(4):1376-85. doi: 10.1016/0006-291x(82)91402-4.
7
Magnesium ion inner sphere complex in the anticodon loop of phenylalanine transfer ribonucleic acid.苯丙氨酸转移核糖核酸反密码子环中的镁离子内球络合物。
Biochemistry. 1982 Jan 5;21(1):49-53. doi: 10.1021/bi00530a009.
8
Pb(II)-catalysed cleavage of the sugar-phosphate backbone of yeast tRNAPhe--implications for lead toxicity and self-splicing RNA.铅（II）催化酵母苯丙氨酸转运核糖核酸糖磷酸主链的裂解——对铅毒性和自我剪接RNA的影响
Nature. 1983;303(5917):543-6. doi: 10.1038/303543a0.
9
Anticodon loop of tRNAPhe: structure, dynamics, and Mg2+ binding.苯丙氨酸转运RNA的反密码子环：结构、动力学及镁离子结合
Biochemistry. 1986 Oct 21;25(21):6365-71. doi: 10.1021/bi00369a004.
10
Anticodon-anticodon interaction induces conformational changes in tRNA: yeast tRNAAsp, a model for tRNA-mRNA recognition.反密码子-反密码子相互作用诱导tRNA构象变化：酵母天冬氨酸tRNA，tRNA- mRNA识别的一个模型。
Proc Natl Acad Sci U S A. 1986 Feb;83(4):932-6. doi: 10.1073/pnas.83.4.932.

引用本文的文献

1
Fe.bleomycin as a probe of RNA conformation.博来霉素作为RNA构象的探针。
Nucleic Acids Res. 1996 Sep 1;24(17):3399-406. doi: 10.1093/nar/24.17.3399.
2
The electrostatic potential and steric accessibility of reactive sites within Z-DNA.Z-DNA 内反应位点的静电势和空间可及性。
Nucleic Acids Res. 1980 Sep 11;8(17):3917-32. doi: 10.1093/nar/8.17.3917.
3
The electrostatic molecular potential of tRNAPhe. IV. The potentials and steric accessibilities of sites associated with the bases.苯丙氨酸转运核糖核酸的静电分子势。IV. 与碱基相关位点的势和空间可及性
Nucleic Acids Res. 1980 Nov 11;8(21):5095-111. doi: 10.1093/nar/8.21.5095.

本文引用的文献

1
High-resolution x-ray diffraction patterns of crystalline transfer RNA that show helical regions.显示螺旋区域的结晶转移核糖核酸的高分辨率X射线衍射图谱。
Proc Natl Acad Sci U S A. 1971 Apr;68(4):841-5. doi: 10.1073/pnas.68.4.841.
2
Interaction of nucleic acids. 8. Binding of magnesium ions by nucleic acids.核酸的相互作用。8. 核酸与镁离子的结合。
J Mol Biol. 1971 Jan 14;55(1):1-21. doi: 10.1016/0022-2836(71)90276-2.
3
Yeast phenylalanine transfer RNA: atomic coordinates and torsion angles.酵母苯丙氨酸转运核糖核酸：原子坐标与扭转角
Nucleic Acids Res. 1975 Dec;2(12):2329-41. doi: 10.1093/nar/2.12.2329.
4
Crystallographic refinement of yeast phenylalanine transfer RNA at 2-5A resolution.酵母苯丙氨酸转运核糖核酸在2至5埃分辨率下的晶体学精修
J Mol Biol. 1976 Dec 25;108(4):619-49. doi: 10.1016/s0022-2836(76)80109-x.
5
Quantum-mechanical studies on the conformation of nucleic acids and their constituents.核酸及其组分构象的量子力学研究。
Prog Nucleic Acid Res Mol Biol. 1976;18:215-322. doi: 10.1016/s0079-6603(08)60589-9.
6
Three-dimensional structure of a transfer rna in two crystal forms.转运核糖核酸两种晶体形式的三维结构
Science. 1976 May 28;192(4242):853-8. doi: 10.1126/science.775636.
7
Atomic coordinates and molecular conformation of yeast phenylalanyl tRNA. An independent investigation.酵母苯丙氨酰tRNA的原子坐标和分子构象。一项独立研究。
Nucleic Acids Res. 1976 Apr;3(4):1111-23. doi: 10.1093/nar/3.4.1111.
8
The molecular electrostatic potential of the B-DNA helix. VI. The regions of the base pairs in poly (dG.dC) and poly (dA.dT).B型DNA螺旋的分子静电势。VI. 聚（dG.dC）和聚（dA.dT）中碱基对的区域
Nucleic Acids Res. 1979 Aug 24;6(12):3821-9. doi: 10.1093/nar/6.12.3821.
9
Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement.酵母苯丙氨酸转移核糖核酸的晶体结构。I. 晶体学精修
J Mol Biol. 1978 Aug 25;123(4):607-30. doi: 10.1016/0022-2836(78)90209-7.
10
Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA.精胺和镁离子与酵母苯丙氨酸转移核糖核酸结合的结构分析。
Proc Natl Acad Sci U S A. 1978 Jan;75(1):64-8. doi: 10.1073/pnas.75.1.64.

酵母苯丙氨酸转运核糖核酸的静电分子势。(I). 磷酸主链产生的势

The electrostatic molecular potential of yeast tRNAPhe. (I). The potential due to the phosphate backbone.

作者信息

Lavery R, Pullman A, Pullman B

出版信息

Nucleic Acids Res. 1980 Mar 11;8(5):1061-79. doi: 10.1093/nar/8.5.1061.

DOI:10.1093/nar/8.5.1061
PMID:7003554
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC323973/
Abstract

We present a preliminary theoretical study of the electrostatic potential surrounding yeast tRNAPhe by computing the component of this potential due to all the 76 phosphate groups of the molecule. The general features of the results obtained are discussed and deductions concerning the binding of Mg2+ ions to the molecule in relation to the potential are presented.

摘要

我们通过计算酵母苯丙氨酸转运核糖核酸（tRNAPhe）分子中所有76个磷酸基团所产生的静电势分量，对其周围的静电势进行了初步理论研究。讨论了所得结果的一般特征，并给出了关于Mg2+离子与该分子结合与电势关系的推论。