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使用RNA连接酶进行寡脱氧核糖核苷酸的制备合成。

The preparative synthesis of oligodeoxyribonucleotides using RNA ligase.

作者信息

Hinton D M, Brennan C A, Gumport R I

出版信息

Nucleic Acids Res. 1982 Mar 25;10(6):1877-94. doi: 10.1093/nar/10.6.1877.

DOI:10.1093/nar/10.6.1877
PMID:7043396
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC320578/
Abstract

The synthesis of nmol quantities of defined sequences of oligodeoxyribonucleotides using T4 RNA ligase has been demonstrated. Reacting using from 18 to 200 nmol of substrates in which a single 2'-deoxyribonucleoside 3',5'-bisphosphate was added to an oligodeoxyribonucleotide resulted in yields from 13 to 95%. When two oligodeoxyribonucleotides were similarly joined using RNA ligase, the yields ranged from 10 to 50%. Although the reactions contained high concentrations of enzyme and were incubated from 5 to 21 days, there was little degradation of either substrates or products. We have also characterized an unusual product which arises when 3'-phosphate terminated oligodeoxyribonucleotides are incubated with RNA ligase and high concentrations of ATP. This product has an adenylyl group linked to the 3'-phosphate by an anhydride bond. The mechanistic and synthetic implications of forming this product are discussed.

摘要

已证明使用T4 RNA连接酶可合成纳摩尔量的特定寡脱氧核糖核苷酸序列。以18至200纳摩尔的底物进行反应,其中将单个2'-脱氧核糖核苷3',5'-双磷酸添加到寡脱氧核糖核苷酸中,产率为13%至95%。当使用RNA连接酶以类似方式连接两个寡脱氧核糖核苷酸时,产率范围为10%至50%。尽管反应中含有高浓度的酶,且孵育5至21天,但底物或产物几乎没有降解。我们还鉴定了一种不寻常的产物,当3'-磷酸末端的寡脱氧核糖核苷酸与RNA连接酶和高浓度的ATP一起孵育时会产生这种产物。该产物具有通过酸酐键与3'-磷酸相连的腺苷酰基。讨论了形成该产物的机制和合成意义。

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1
The preparative synthesis of oligodeoxyribonucleotides using RNA ligase.使用RNA连接酶进行寡脱氧核糖核苷酸的制备合成。
Nucleic Acids Res. 1982 Mar 25;10(6):1877-94. doi: 10.1093/nar/10.6.1877.
2
T4 ribonucleic acid ligase joins single-strand oligo(deoxyribonucleotides).T4核糖核酸连接酶连接单链寡(脱氧核糖核苷酸)。
Biochemistry. 1980 Feb 19;19(4):635-42. doi: 10.1021/bi00545a005.
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The synthesis of oligodeoxyribonucleotides using RNA ligase.使用RNA连接酶合成寡脱氧核糖核苷酸。
Nucleic Acids Res. 1979 Sep 25;7(2):453-64. doi: 10.1093/nar/7.2.453.
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T4 RNA ligase as a nucleic acid synthesis and modification reagent.T4 RNA连接酶作为一种核酸合成与修饰试剂。
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本文引用的文献

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Some effects of charge and structure upon ionic interactions of nucleic acids.电荷与结构对核酸离子相互作用的一些影响。
Biochim Biophys Acta. 1961 Jul 22;51:19-32. doi: 10.1016/0006-3002(61)91012-5.
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T4 ribonucleic acid ligase joins single-strand oligo(deoxyribonucleotides).T4核糖核酸连接酶连接单链寡(脱氧核糖核苷酸)。
Biochemistry. 1980 Feb 19;19(4):635-42. doi: 10.1021/bi00545a005.
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T4 RNA ligase as a nucleic acid synthesis and modification reagent.T4 RNA连接酶作为一种核酸合成与修饰试剂。
RNA 剪接连接酶 RtcB 将 RNA 的 3'-末端磷酸基团和 5'-OH 连接在一起的鸟苷酰化作用的结构和机制见解。
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The human RNA 3'-terminal phosphate cyclase is a member of a new family of proteins conserved in Eucarya, Bacteria and Archaea.人类RNA 3'-末端磷酸环化酶是真核生物、细菌和古细菌中保守的一个新蛋白质家族的成员。
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T4 RNA ligase catalyzed synthesis of base analogue-containing oligodeoxyribonucleotides and a characterization of their thermal stabilities.T4 RNA连接酶催化含碱基类似物的寡脱氧核糖核苷酸的合成及其热稳定性的表征。
Nucleic Acids Res. 1985 Dec 20;13(24):8665-84. doi: 10.1093/nar/13.24.8665.
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Cyclization of RNA 3'-terminal phosphate by cyclase from HeLa cells proceeds via formation of N(3')pp(5')A activated intermediate.来自HeLa细胞的环化酶使RNA 3'-末端磷酸环化是通过形成N(3')pp(5')A活化中间体进行的。
Proc Natl Acad Sci U S A. 1985 Mar;82(5):1316-20. doi: 10.1073/pnas.82.5.1316.
8
Ligation with T4 RNA ligase of an oligodeoxyribonucleotide to covalently-linked cross-sectional base-pair analogues of short, normal, and long dimensions.用T4 RNA连接酶将寡脱氧核糖核苷酸连接到短、正常和长尺寸的共价连接的横截面碱基对类似物上。
Nucleic Acids Res. 1991 Feb 11;19(3):585-90. doi: 10.1093/nar/19.3.585.
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4
T4 RNA ligase as a nucleic acid synthesis and modification reagent.T4 RNA连接酶作为一种核酸合成与修饰试剂。
Nucleic Acids Symp Ser. 1980(7):167-71.
5
Properties of synthetic polydeoxyribonucleotide complexes containing adenine and bromouracil.含腺嘌呤和溴尿嘧啶的合成聚脱氧核糖核苷酸复合物的性质
Biochemistry. 1971 Oct 12;10(21):3819-25. doi: 10.1021/bi00797a003.
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Chromatography of 32P-labelled oligonucleotides on thin layers of DEAE-cellulose.32P 标记的寡核苷酸在二乙氨基乙基纤维素薄层上的色谱分析。
Eur J Biochem. 1969 Dec;11(2):395-9. doi: 10.1111/j.1432-1033.1969.tb00786.x.
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Studies on polynucleotides. LXIX. Synthetic deoxyribopolynucleotides as templates for the DNA polymerase of Escherichia coli: DNA-like polymers containing repeating trinucleotide sequences.多核苷酸研究。第六十九篇。合成脱氧核糖多核苷酸作为大肠杆菌DNA聚合酶的模板:含有重复三核苷酸序列的类DNA聚合物。
J Mol Biol. 1967 Jul 28;27(2):237-63. doi: 10.1016/0022-2836(67)90018-6.
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Purification and properties of bacteriophage T4-induced RNA ligase.噬菌体T4诱导的RNA连接酶的纯化及性质
Proc Natl Acad Sci U S A. 1972 Oct;69(10):3009-13. doi: 10.1073/pnas.69.10.3009.
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Determination of recognition sites of T4 RNA ligase on the 3'-OH and 5' -P termini of polyribonucleotide chains.T4 RNA连接酶在多聚核糖核苷酸链3'-OH和5'-P末端识别位点的确定
Nature. 1975 Apr 3;254(5499):452-4. doi: 10.1038/254452a0.
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T4 RNA Ligase joins 2'-deoxyribonucleoside 3',5'-bisphosphates to oligodeoxyribonucleotides.T4 RNA连接酶将2'-脱氧核糖核苷3',5'-二磷酸连接到寡脱氧核糖核苷酸上。
Biochemistry. 1978 Nov 28;17(24):5091-7. doi: 10.1021/bi00617a004.