Freire E, Snyder B
Biophys J. 1982 Mar;37(3):617-24.
The dependence of the lateral distribution of membrane proteins on the size, protein/lipoid molar ratio, and the magnitude of the interaction potentials has been investigated by computer modeling protein-lipid distributions with Monte Carlo calculations. These results have allowed us to develop a quantitative characterization of the distribution of membrane proteins and to correlate these distributions with experimental observables. The topological arrangement of protein domains, protein plus annular lipid domains, and free lipid domains is described in terms of radial distribution, pair connectedness, and cluster distribution functions. The radial distribution functions are used to measure the distribution of intermolecular distances between protein molecules, whereas the pair connectedness functions are used to estimate the physical extension of compositional domains. It is shown that, at characteristic protein/lipid molar ratios, previously isolated domains become connected, forming domain networks that extend over the entire membrane surface. These changes in the lateral connectivity of compositional domains are paralleled by changes in the calculated lateral diffusion coefficients and might have important implications for the regulation of diffusion controlled processes within the membrane.
通过用蒙特卡罗计算对蛋白质 - 脂质分布进行计算机建模,研究了膜蛋白横向分布对大小、蛋白质/脂质摩尔比以及相互作用势大小的依赖性。这些结果使我们能够对膜蛋白分布进行定量表征,并将这些分布与实验可观测量相关联。蛋白质结构域、蛋白质加环形脂质结构域和游离脂质结构域的拓扑排列是根据径向分布、对连通性和簇分布函数来描述的。径向分布函数用于测量蛋白质分子之间分子间距离的分布,而对连通性函数用于估计组成结构域的物理延伸。结果表明,在特征性蛋白质/脂质摩尔比下,先前孤立的结构域会连接起来,形成覆盖整个膜表面的结构域网络。组成结构域横向连通性的这些变化与计算出的横向扩散系数的变化并行,并且可能对膜内扩散控制过程的调节具有重要意义。