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通过改变DNA旋转信息来改变核小体位置。

Changing nucleosome positions through modification of the DNA rotational information.

作者信息

Buttinelli M, Negri R, Di Marcotullio L, Di Mauro E

机构信息

Centro Acidi Nucleici, Consiglio Nazionale delle Ricerche, Università di Roma La Sapienza, Italy.

出版信息

Proc Natl Acad Sci U S A. 1995 Nov 7;92(23):10747-51. doi: 10.1073/pnas.92.23.10747.

DOI:10.1073/pnas.92.23.10747
PMID:7479876
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC40689/
Abstract

The effects of the rotational information of DNA in determining the in vitro localization of nucleosomal core particles (ncps) have been studied in the Saccharomyces cerevisiae 5S rRNA repeat gene. We have altered the distribution of the phased series of flexibility signals present on this DNA by inserting a 25-bp tract, and we have analyzed the effects of this mutation on the distribution and on the frequencies of ncps, as compared with the wild type and a reference 21-bp insertion mutant. The variation of the standard free energy of nucleosome reconstitution was determined. The results show that the DNA rotational information is a major determinant of ncps positioning, define how many rotationally phased signals are required for the formation of a stable particle, and teach how to modify their distribution through the alteration of the rotational signals.

摘要

在酿酒酵母5S rRNA重复基因中,研究了DNA的旋转信息在确定核小体核心颗粒(ncps)体外定位方面的作用。我们通过插入一段25个碱基对的序列,改变了该DNA上存在的相位系列柔性信号的分布,并与野生型和一个参考21个碱基对插入突变体相比,分析了这种突变对ncps分布和频率的影响。测定了核小体重构标准自由能的变化。结果表明,DNA旋转信息是ncps定位的主要决定因素,确定了形成稳定颗粒所需的旋转相位信号数量,并表明如何通过改变旋转信号来改变其分布。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f11/40689/2189e3bc5d17/pnas01501-0316-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f11/40689/cb502cf4f39a/pnas01501-0315-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f11/40689/2189e3bc5d17/pnas01501-0316-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f11/40689/cb502cf4f39a/pnas01501-0315-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f11/40689/2189e3bc5d17/pnas01501-0316-a.jpg

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Changing nucleosome positions through modification of the DNA rotational information.通过改变DNA旋转信息来改变核小体位置。
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引用本文的文献

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Multiple sequence-directed possibilities provide a pool of nucleosome position choices in different states of activity of a gene.多种序列导向的可能性为基因在不同活性状态下的核小体位置选择提供了一个库。
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2
Changing nucleosome positions in vivo through modification of the DNA rotational information.通过改变DNA旋转信息在体内改变核小体位置。
Biochem J. 1998 Jul 1;333 ( Pt 1)(Pt 1):65-9. doi: 10.1042/bj3330065.

本文引用的文献

1
Multiple nucleosome positioning with unique rotational setting for the Saccharomyces cerevisiae 5S rRNA gene in vitro and in vivo.酿酒酵母5S rRNA基因在体外和体内具有独特旋转设置的多个核小体定位
Proc Natl Acad Sci U S A. 1993 Oct 15;90(20):9315-9. doi: 10.1073/pnas.90.20.9315.
2
The pitch of chromatin DNA is reflected in its nucleotide sequence.染色质DNA的螺距反映在其核苷酸序列中。
Proc Natl Acad Sci U S A. 1980 Jul;77(7):3816-20. doi: 10.1073/pnas.77.7.3816.
3
Reconstitution experiments show that sequence-specific histone-DNA interactions are the basis for nucleosome phasing on mouse satellite DNA.
重组实验表明,序列特异性组蛋白 - DNA 相互作用是小鼠卫星 DNA 上核小体相位排列的基础。
Cell. 1985 Aug;42(1):281-90. doi: 10.1016/s0092-8674(85)80123-9.
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DNA bending and its relation to nucleosome positioning.DNA弯曲及其与核小体定位的关系。
J Mol Biol. 1985 Dec 20;186(4):773-90. doi: 10.1016/0022-2836(85)90396-1.
5
Statistical positioning of nucleosomes by specific protein-binding to an upstream activating sequence in yeast.通过特定蛋白质与酵母中上游激活序列的结合对核小体进行统计定位。
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The bending of DNA in nucleosomes and its wider implications.核小体中DNA的弯曲及其更广泛的影响。
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The terminus of SV40 DNA replication and transcription contains a sharp sequence-directed curve.
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Artificial nucleosome positioning sequences.人工核小体定位序列
Proc Natl Acad Sci U S A. 1989 Oct;86(19):7418-22. doi: 10.1073/pnas.86.19.7418.
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Asymmetry and polarity of nucleosomes in chicken erythrocyte chromatin.鸡红细胞染色质中核小体的不对称性和极性
EMBO J. 1989 Jan;8(1):229-38. doi: 10.1002/j.1460-2075.1989.tb03368.x.
10
Initiation of transcription on nucleosomal templates.核小体模板上转录的起始
Proc Natl Acad Sci U S A. 1989 Dec;86(24):9817-21. doi: 10.1073/pnas.86.24.9817.