古细菌中类真核生物蛋白激酶基因的鉴定。
Identification of a eukaryotic-like protein kinase gene in Archaebacteria.
作者信息
Smith R F, King K Y
机构信息
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.
出版信息
Protein Sci. 1995 Jan;4(1):126-9. doi: 10.1002/pro.5560040115.
Abstract
Primary sequence patterns based on known conserved sites in eukaryotic protein kinases were used to search for eukaryotic-like protein kinase sequences in a six-frame translation of the bacterial subsection of GenBank. This search identified a previously unrecognized eukaryotic-like protein kinase gene in three related methanogenic archaebacteria, Methanococcus vannielii, M. voltae, and M. thermolithotrophicus. The proposed coding sequences are located in orthologous open reading frames (ORFs): ORF547, ORF294, and ORF114, respectively. The C-terminus of the ORFs contains 9 of the 11 subdomains characteristically conserved within the eukaryotic protein kinase catalytic domain. The N-terminus of the ORFs is similar to a putative glycoprotease in Pasteurella haemolytica and its homologue in Escherichia coli, the orfX gene. This is the first report of a eukaryotic-like protein kinase sequence observed in Archaebacteria.
摘要
基于真核生物蛋白激酶中已知保守位点的一级序列模式，用于在GenBank细菌部分的六框架翻译中搜索类真核生物蛋白激酶序列。该搜索在三种相关的产甲烷古细菌——万氏甲烷球菌、沃氏甲烷球菌和嗜热嗜石甲烷球菌中鉴定出一个以前未被识别的类真核生物蛋白激酶基因。拟编码序列分别位于直系同源开放阅读框（ORF）中：ORF547、ORF294和ORF114。这些ORF的C末端包含真核生物蛋白激酶催化域内特征性保守的11个亚结构域中的9个。这些ORF的N末端类似于溶血巴斯德氏菌中的一种假定糖蛋白酶及其在大肠杆菌中的同源物orfX基因。这是在古细菌中观察到类真核生物蛋白激酶序列的首次报道。
相似文献
1
Identification of a eukaryotic-like protein kinase gene in Archaebacteria.古细菌中类真核生物蛋白激酶基因的鉴定。
Protein Sci. 1995 Jan;4(1):126-9. doi: 10.1002/pro.5560040115.
2
The adenylate kinase genes of M. voltae, M. thermolithotrophicus, M. jannaschii, and M. igneus define a new family of adenylate kinases.沃氏甲烷球菌、嗜热栖热放线菌、詹氏甲烷球菌和火栖甲烷球菌的腺苷酸激酶基因定义了一个新的腺苷酸激酶家族。
Gene. 1997 Feb 7;185(2):239-44. doi: 10.1016/s0378-1119(96)00651-8.
3
Unidentified open reading frames in the genome of Methanococcus jannaschii are similar in sequence to an archaebacterial gene for tRNA nucleotidyltransferase.詹氏甲烷球菌基因组中未鉴定的开放阅读框在序列上与古细菌的tRNA核苷酸转移酶基因相似。
J Mol Evol. 1997 Jun;44(6):686-9. doi: 10.1007/pl00013143.
4
Structure and organization of the hisA gene of the thermophilic archaebacterium Methanococcus thermolithotrophicus.
J Bacteriol. 1987 Oct;169(10):4857-60. doi: 10.1128/jb.169.10.4857-4860.1987.
5
Structure and sequence divergence of two archaebacterial genes.两个古细菌基因的结构与序列差异
Proc Natl Acad Sci U S A. 1985 Jun;82(12):4207-11. doi: 10.1073/pnas.82.12.4207.
6
Selenoprotein synthesis in archaea: identification of an mRNA element of Methanococcus jannaschii probably directing selenocysteine insertion.古菌中的硒蛋白合成：詹氏甲烷球菌中一个可能指导硒代半胱氨酸插入的mRNA元件的鉴定。
J Mol Biol. 1997 Mar 7;266(4):637-41. doi: 10.1006/jmbi.1996.0812.
7
Identification and characterization of a DNA primase from the hyperthermophilic archaeon Methanococcus jannaschii.嗜热古菌詹氏甲烷球菌DNA引发酶的鉴定与特性分析。
Nucleic Acids Res. 1999 Nov 15;27(22):4444-50. doi: 10.1093/nar/27.22.4444.
8
Characterization of flagellum gene families of methanogenic archaea and localization of novel flagellum accessory proteins.产甲烷古菌鞭毛基因家族的特征及新型鞭毛辅助蛋白的定位
J Bacteriol. 2001 Dec;183(24):7154-64. doi: 10.1128/JB.183.24.7154-7164.2001.
9
Identification and characterisation of the selenocysteine-specific translation factor SelB from the archaeon Methanococcus jannaschii.来自嗜压甲烷球菌的硒代半胱氨酸特异性翻译因子SelB的鉴定与表征。
J Mol Biol. 2000 Jun 2;299(2):351-8. doi: 10.1006/jmbi.2000.3756.
10
Non-canonical inteins.非经典内含肽
Nucleic Acids Res. 1998 Apr 1;26(7):1741-8. doi: 10.1093/nar/26.7.1741.
引用本文的文献
1
Combinations of genes create multiple meiotic drivers in .基因组合在 中产生多种减数分裂驱动因素。
Elife. 2019 Jul 26;8:e46454. doi: 10.7554/eLife.46454.
2
Evolutionary Ancestry of Eukaryotic Protein Kinases and Choline Kinases.真核生物蛋白激酶和胆碱激酶的进化谱系
J Biol Chem. 2016 Mar 4;291(10):5199-205. doi: 10.1074/jbc.M115.691428. Epub 2016 Jan 7.
3
Protein Ser/Thr/Tyr phosphorylation in the Archaea.古菌中的蛋白丝氨酸/苏氨酸/酪氨酸磷酸化。
J Biol Chem. 2014 Apr 4;289(14):9480-7. doi: 10.1074/jbc.R113.529412. Epub 2014 Feb 19.
4
Post-translation modification in Archaea: lessons from Haloferax volcanii and other haloarchaea.古菌中的翻译后修饰：来自沃氏嗜盐碱杆菌和其他盐杆菌的启示。
FEMS Microbiol Rev. 2013 Jul;37(4):583-606. doi: 10.1111/1574-6976.12012. Epub 2012 Dec 20.
5
A framework for classification of prokaryotic protein kinases.原核蛋白激酶分类框架。
PLoS One. 2010 May 26;5(5):e10608. doi: 10.1371/journal.pone.0010608.
6
Posttranslational protein modification in Archaea.古菌中的蛋白质翻译后修饰
Microbiol Mol Biol Rev. 2005 Sep;69(3):393-425. doi: 10.1128/MMBR.69.3.393-425.2005.
7
A phosphoprotein from the archaeon Sulfolobus solfataricus with protein-serine/threonine kinase activity.一种来自嗜热栖热菌的具有蛋白质丝氨酸/苏氨酸激酶活性的磷蛋白。
J Bacteriol. 2004 Jan;186(2):463-72. doi: 10.1128/JB.186.2.463-472.2004.
8
Open reading frame sso2387 from the archaeon Sulfolobus solfataricus encodes a polypeptide with protein-serine kinase activity.来自嗜热栖热放线菌的开放阅读框sso2387编码一种具有蛋白质丝氨酸激酶活性的多肽。
J Bacteriol. 2003 Jun;185(11):3436-45. doi: 10.1128/JB.185.11.3436-3445.2003.
9
The membrane-associated protein-serine/threonine kinase from Sulfolobus solfataricus is a glycoprotein.来自嗜热栖热菌的膜相关蛋白丝氨酸/苏氨酸激酶是一种糖蛋白。
J Bacteriol. 2002 May;184(10):2614-9. doi: 10.1128/JB.184.10.2614-2619.2002.
10
The archaeon Sulfolobus solfataricus contains a membrane-associated protein kinase activity that preferentially phosphorylates threonine residues in vitro.嗜热栖热菌（Sulfolobus solfataricus）含有一种与膜相关的蛋白激酶活性，该活性在体外优先磷酸化苏氨酸残基。
J Bacteriol. 2000 Jun;182(12):3452-9. doi: 10.1128/JB.182.12.3452-3459.2000.
本文引用的文献
1
A secreted protein kinase of Yersinia pseudotuberculosis is an indispensable virulence determinant.耶尔森氏假结核杆菌的一种分泌型蛋白激酶是不可或缺的毒力决定因素。
Nature. 1993 Feb 25;361(6414):730-2. doi: 10.1038/361730a0.
2
Eukaryotic-like protein serine/threonine kinases in Myxococcus xanthus, a developmental bacterium exhibiting social behavior.在黄粘球菌（一种表现出社会行为的发育细菌）中发现的类真核蛋白丝氨酸/苏氨酸激酶。
J Cell Biochem. 1993 Jan;51(1):29-33. doi: 10.1002/jcb.240510107.
3
Introduction: protein phosphorylation and signal transduction in bacteria.引言：细菌中的蛋白质磷酸化与信号转导
J Cell Biochem. 1993 Jan;51(1):1-6. doi: 10.1002/jcb.240510102.
4
The PROSITE dictionary of sites and patterns in proteins, its current status.蛋白质位点与模式的PROSITE字典及其当前状态。
Nucleic Acids Res. 1993 Jul 1;21(13):3097-103. doi: 10.1093/nar/21.13.3097.
5
GenBank.基因银行
Nucleic Acids Res. 1993 Jul 1;21(13):2963-5. doi: 10.1093/nar/21.13.2963.
6
Large scale bacterial gene discovery by similarity search.通过相似性搜索进行大规模细菌基因发现。
Nat Genet. 1994 Jun;7(2):205-14. doi: 10.1038/ng0694-205.
7
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.蛋白质二级结构词典：氢键和几何特征的模式识别
Biopolymers. 1983 Dec;22(12):2577-637. doi: 10.1002/bip.360221211.
8
Structure and sequence divergence of two archaebacterial genes.两个古细菌基因的结构与序列差异
Proc Natl Acad Sci U S A. 1985 Jun;82(12):4207-11. doi: 10.1073/pnas.82.12.4207.
9
Possible new genes as revealed by molecular analysis of a 5-kb Escherichia coli chromosomal region 5' to the rpsU-dnaG-rpoD macromolecular-synthesis operon.通过对rpsU-dnaG-rpoD大分子合成操纵子上游5kb大肠杆菌染色体区域进行分子分析所揭示的潜在新基因。
Gene. 1987;51(2-3):149-61. doi: 10.1016/0378-1119(87)90303-9.
10
The protein kinase family: conserved features and deduced phylogeny of the catalytic domains.蛋白激酶家族：催化结构域的保守特征与推导的系统发育
Science. 1988 Jul 1;241(4861):42-52. doi: 10.1126/science.3291115.
Zotero 插件