Garvin D F, Weeden N F, Doyle J J
Department of Horticultural Sciences, Cornell University, New York State Agricultural Experiment Station, Geneva 14456.
Plant Mol Biol. 1994 Oct;26(2):643-55. doi: 10.1007/BF00013750.
The zinc-binding long-chain alcohol dehydrogenases from plants and animals exhibit a considerable level of amino acid sequence conservation. While the functional importance of many of the conserved residues is known, the role of others has not yet been determined. We have identified a naturally occurring Adh-1 allele in the legume Phaseolus acutifolius with several unusual characteristics. Individuals homozygous for this allele, Adh-1 CN, possess a single isozyme starch gel electrophoretic pattern suggestive of a null allele, and exhibit ADH enzyme activity levels ca. 60% lower than the standard wild-type Adh-1F line. Interestingly, analysis of Adh-1CN homozygotes on an alternative gel system indicates that Adh-1CN does encode a polypeptide capable of forming functional homo- and heterodimers. However, the levels of ADH activity displayed by these isozymes are far lower than those observed for the corresponding wild type ADH-1F isozymes. Dialysis experiments indicate that isozymes containing the ADH-1CN polypeptide are inactivated by slightly acidic conditions, which may explain the apparent null phenotype on starch gels. Elevated temperatures cause a similar loss of enzyme activity. The deduced amino acid sequences of ADH-1CN and ADH-1F were obtained from their corresponding cDNA clones, and the only significant difference detected between the two is a single amino acid replacement substitution. Residue 144 is occupied by phenylalanine in the ADH-1F polypeptide, whereas serine occupies this position in the ADH-1CN polypeptide. The proximity of residue 144 to the catalytic zinc in the substrate-binding pocket, coupled with the fact that it is integral to a defined hydrophobic core of the ADH polypeptide, may explain the observed disruptive effect that the serine substitution has on both the activity and stability of the ADH-1CN polypeptide. It also provides an explanation for the maintenance of phenylalanine or the structurally similar tyrosine at this residue in Zn-binding long-chain ADHs.
来自植物和动物的锌结合型长链醇脱氢酶表现出相当程度的氨基酸序列保守性。虽然许多保守残基的功能重要性已为人所知,但其他残基的作用尚未确定。我们在豆科植物尖叶菜豆中鉴定出一个具有几个不寻常特征的天然存在的Adh-1等位基因。该等位基因Adh-1 CN的纯合个体具有单一同工酶淀粉凝胶电泳图谱,提示为无效等位基因,并且其ADH酶活性水平比标准野生型Adh-1F品系低约60%。有趣的是,在另一种凝胶系统上对Adh-1 CN纯合子的分析表明,Adh-1 CN确实编码一种能够形成功能性同二聚体和异二聚体的多肽。然而,这些同工酶所显示的ADH活性水平远低于相应野生型ADH-1F同工酶所观察到的水平。透析实验表明,含有ADH-1 CN多肽的同工酶在略酸性条件下会失活,这可能解释了淀粉凝胶上明显的无效表型。温度升高会导致类似的酶活性丧失。从其相应的cDNA克隆中获得了ADH-1 CN和ADH-1F的推导氨基酸序列,两者之间检测到的唯一显著差异是一个单氨基酸替换。在ADH-1F多肽中,第144位残基为苯丙氨酸,而在ADH-1 CN多肽中该位置为丝氨酸。第144位残基靠近底物结合口袋中的催化锌,再加上它是ADH多肽确定的疏水核心的组成部分,这可能解释了观察到的丝氨酸替换对ADH-1 CN多肽的活性和稳定性产生的破坏作用。这也为在锌结合型长链ADH中该残基处维持苯丙氨酸或结构相似的酪氨酸提供了解释。