• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

动物线粒体基因组中普遍存在的CpG抑制现象。

Pervasive CpG suppression in animal mitochondrial genomes.

作者信息

Cardon L R, Burge C, Clayton D A, Karlin S

机构信息

Department of Mathematics, Stanford University, CA 94035.

出版信息

Proc Natl Acad Sci U S A. 1994 Apr 26;91(9):3799-803. doi: 10.1073/pnas.91.9.3799.

DOI:10.1073/pnas.91.9.3799
PMID:8170990
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC43669/
Abstract

All available complete mitochondrial genomes (21 species) are evaluated for dinucleotide over- and under-representation. The CpG dinucleotide is pervasively under-represented in all animal mitochondria, but it is of variable relative abundance in fungal, protist, and plant mitochondrial genomes. Interpretations and hypotheses are considered relative to mitochondrial genome organization, methylation, structural specificities, directed mutation, and evolutionary events. In particular, our results support Mycoplasma capricolum or a close relative as the most likely bacterial ancestor of the mitochondria.

摘要

对所有可得的完整线粒体基因组(21个物种)进行二核苷酸过表达和低表达评估。CpG二核苷酸在所有动物线粒体中普遍低表达,但在真菌、原生生物和植物线粒体基因组中的相对丰度各不相同。结合线粒体基因组组织、甲基化、结构特异性、定向突变和进化事件对相关解释和假设进行了考量。特别是,我们的结果支持山羊支原体或其近亲是线粒体最有可能的细菌祖先。

相似文献

1
Pervasive CpG suppression in animal mitochondrial genomes.动物线粒体基因组中普遍存在的CpG抑制现象。
Proc Natl Acad Sci U S A. 1994 Apr 26;91(9):3799-803. doi: 10.1073/pnas.91.9.3799.
2
Which bacterium is the ancestor of the animal mitochondrial genome?哪种细菌是动物线粒体基因组的祖先?
Proc Natl Acad Sci U S A. 1994 Dec 20;91(26):12842-6. doi: 10.1073/pnas.91.26.12842.
3
The evolution of species-type specificity in the global DNA sequence organization of mitochondrial genomes.线粒体基因组全球DNA序列组织中物种类型特异性的演变。
Genome. 1997 Jun;40(3):342-56. doi: 10.1139/g97-047.
4
Analysis of the mitochondrial and nuclear genomes of two basidiomycetes, Coprinus cinereus and Coprinus stercorarius.两种担子菌——灰盖鬼伞和粪生鬼伞的线粒体和核基因组分析。
Curr Genet. 1986;10(7):515-25. doi: 10.1007/BF00447385.
5
Over- and under-representation of short oligonucleotides in DNA sequences.DNA序列中短寡核苷酸的过度和不足表现
Proc Natl Acad Sci U S A. 1992 Feb 15;89(4):1358-62. doi: 10.1073/pnas.89.4.1358.
6
Heterogeneity of genomes: measures and values.基因组的异质性:测量方法与数值
Proc Natl Acad Sci U S A. 1994 Dec 20;91(26):12837-41. doi: 10.1073/pnas.91.26.12837.
7
Skew of mononucleotide frequencies, relative abundance of dinucleotides, and DNA strand asymmetry.单核苷酸频率偏差、二核苷酸相对丰度及DNA链不对称性。
J Mol Evol. 2001 Oct-Nov;53(4-5):364-76. doi: 10.1007/s002390010226.
8
Short repetitive sequences in green algal mitochondrial genomes: potential roles in mitochondrial genome evolution.绿藻线粒体基因组中的短重复序列:在线粒体基因组进化中的潜在作用。
Mol Biol Evol. 1998 Jun;15(6):690-701. doi: 10.1093/oxfordjournals.molbev.a025972.
9
Comparative analysis of the complete mitochondrial genomes of Aspergillus niger mtDNA type 1a and Aspergillus tubingensis mtDNA type 2b.黑曲霉1a型线粒体DNA与管囊曲霉2b型线粒体DNA完整基因组的比较分析。
FEMS Microbiol Lett. 2008 Apr;281(1):51-7. doi: 10.1111/j.1574-6968.2008.01077.x.
10
Complete mitochondrial genome sequence of the phytopathogenic fungus Penicillium digitatum and comparative analysis of closely related species.病原菌Penicillium digitatum 的完整线粒体基因组序列及其近缘种的比较分析。
FEMS Microbiol Lett. 2011 Oct;323(1):29-34. doi: 10.1111/j.1574-6968.2011.02358.x. Epub 2011 Aug 5.

引用本文的文献

1
Oligomer-based functions of mitochondrial porin.线粒体孔蛋白基于寡聚体的功能。
Nat Commun. 2025 Jul 25;16(1):6854. doi: 10.1038/s41467-025-62021-4.
2
Cytosolic nucleic acid sensing as driver of critical illness: mechanisms and advances in therapy.胞质核酸感应作为危重症的驱动因素:机制与治疗进展
Signal Transduct Target Ther. 2025 Mar 19;10(1):90. doi: 10.1038/s41392-025-02174-2.
3
Disruption of tumor-intrinsic PGAM5 increases anti-PD-1 efficacy through the CCL2 signaling pathway.肿瘤内在的PGAM5的破坏通过CCL2信号通路增强抗PD-1疗效。
J Immunother Cancer. 2025 Jan 7;13(1):e009993. doi: 10.1136/jitc-2024-009993.
4
Novel Insights into Parkin-Mediated Mitochondrial Dysfunction and "Mito-Inflammation" in α-Synuclein Toxicity. The Role of the cGAS-STING Signalling Pathway.帕金森蛋白介导的线粒体功能障碍及α-突触核蛋白毒性中的“线粒体炎症”新见解。环鸟苷酸-腺苷酸合成酶-干扰素基因刺激蛋白信号通路的作用。
J Inflamm Res. 2024 Jul 11;17:4549-4574. doi: 10.2147/JIR.S468609. eCollection 2024.
5
Trafficking and effect of released DNA on cGAS-STING signaling pathway and cardiovascular disease.释放 DNA 对 cGAS-STING 信号通路的转导作用及其与心血管疾病的关系。
Front Immunol. 2023 Dec 13;14:1287130. doi: 10.3389/fimmu.2023.1287130. eCollection 2023.
6
Mitochondrial Dysfunction-Associated Mechanisms in the Development of Chronic Liver Diseases.慢性肝病发生发展中与线粒体功能障碍相关的机制
Biology (Basel). 2023 Oct 5;12(10):1311. doi: 10.3390/biology12101311.
7
Mitochondrial control of innate immune responses.线粒体对固有免疫反应的调控。
Front Immunol. 2023 May 30;14:1166214. doi: 10.3389/fimmu.2023.1166214. eCollection 2023.
8
Who and how, DNA sensors in NETs-driven inflammation.NETs 驱动炎症中的 DNA 传感器:谁和如何。
Front Immunol. 2023 Apr 28;14:1190177. doi: 10.3389/fimmu.2023.1190177. eCollection 2023.
9
An investigation of codon usage pattern analysis in pancreatitis associated genes.对胰腺炎相关基因密码子使用模式分析的研究。
BMC Genom Data. 2022 Nov 25;23(1):81. doi: 10.1186/s12863-022-01089-z.
10
The role of mitochondria in rheumatic diseases.线粒体在风湿性疾病中的作用。
Nat Rev Rheumatol. 2022 Nov;18(11):621-640. doi: 10.1038/s41584-022-00834-z. Epub 2022 Sep 29.

本文引用的文献

1
Mitochondrial transcription initiation. Variation and conservation.线粒体转录起始。变异与保守性。
J Biol Chem. 1993 Aug 5;268(22):16083-6.
2
Molecular evolution of herpesviruses: genomic and protein sequence comparisons.疱疹病毒的分子进化:基因组和蛋白质序列比较
J Virol. 1994 Mar;68(3):1886-902. doi: 10.1128/JVI.68.3.1886-1902.1994.
3
Sequence of introns and flanking exons in wild-type and box3 mutants of cytochrome b reveals an interlaced splicing protein coded by an intron.细胞色素b野生型和box3突变体中内含子及侧翼外显子的序列揭示了一个由内含子编码的交错剪接蛋白。
Cell. 1980 Nov;22(2 Pt 2):333-48. doi: 10.1016/0092-8674(80)90344-x.
4
Nearest neighbor nucleotide patterns. Structural and biological implications.最近邻核苷酸模式。结构和生物学意义。
J Biol Chem. 1981 Aug 25;256(16):8458-62.
5
Methylation pattern of mouse mitochondrial DNA.小鼠线粒体DNA的甲基化模式
Nucleic Acids Res. 1984 Jun 25;12(12):4811-24. doi: 10.1093/nar/12.12.4811.
6
Organization of ribosomal RNA genes in Mycoplasma capricolum.山羊支原体中核糖体RNA基因的组织
Mol Gen Genet. 1984;196(2):311-6. doi: 10.1007/BF00328064.
7
Replication of animal mitochondrial DNA.动物线粒体DNA的复制
Cell. 1982 Apr;28(4):693-705. doi: 10.1016/0092-8674(82)90049-6.
8
5-methylcytidylic acid: absence from mitochondrial DNA of frogs and HeLa cells.5-甲基胞苷酸:在青蛙和海拉细胞的线粒体DNA中不存在。
Science. 1974 Apr 5;184(4132):80-1. doi: 10.1126/science.184.4132.80.
9
Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms.从线虫线粒体基因组DNA序列推断出的奇异转运RNA
Proc Natl Acad Sci U S A. 1987 Mar;84(5):1324-8. doi: 10.1073/pnas.84.5.1324.
10
Predicting DNA duplex stability from the base sequence.根据碱基序列预测DNA双链稳定性。
Proc Natl Acad Sci U S A. 1986 Jun;83(11):3746-50. doi: 10.1073/pnas.83.11.3746.