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酵母中基因靶向的频率取决于靶拷贝的数量。

The frequency of gene targeting in yeast depends on the number of target copies.

作者信息

Wilson J H, Leung W Y, Bosco G, Dieu D, Haber J E

机构信息

Department of Biochemistry, Baylor College of Medicine, Houston, TX 77030.

出版信息

Proc Natl Acad Sci U S A. 1994 Jan 4;91(1):177-81. doi: 10.1073/pnas.91.1.177.

DOI:10.1073/pnas.91.1.177
PMID:8278360
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC42909/
Abstract

We have compared the efficiency of transformation by linear DNA fragments in yeast strains carrying different numbers of homologous targets for recombination. In strains carrying dispersed copies of a target and in strains carrying tandem arrays, the frequency of transformation is proportional to the number of targets. This result is in contrast to previous studies of transformation in mammalian cells, where targeted integration was insensitive to the number of targets. We conclude that, in yeast, the search for a homologous partner is a rate-limiting step in the successful recombination of linearized DNA fragments. Furthermore, the fact that we obtain the same results with both dispersed and clustered targets argues against models of homology searching in which DNA becomes nonspecifically associated with a chromosome and then slides along the DNA until homology is encountered.

摘要

我们比较了携带不同数量同源重组靶点的酵母菌株中线性DNA片段的转化效率。在携带靶点分散拷贝的菌株和携带串联阵列的菌株中,转化频率与靶点数量成正比。这一结果与之前对哺乳动物细胞转化的研究形成对比,在哺乳动物细胞中,靶向整合对靶点数量不敏感。我们得出结论,在酵母中,寻找同源配对物是线性化DNA片段成功重组的限速步骤。此外,我们在分散靶点和聚集靶点上都获得了相同结果,这一事实与同源性搜索模型相悖,在这些模型中,DNA与染色体非特异性结合,然后沿着DNA滑动,直到遇到同源性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7788/42909/51603d4cf6e5/pnas01532-0195-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7788/42909/51603d4cf6e5/pnas01532-0195-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7788/42909/51603d4cf6e5/pnas01532-0195-a.jpg

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The frequency of gene targeting in yeast depends on the number of target copies.酵母中基因靶向的频率取决于靶拷贝的数量。
Proc Natl Acad Sci U S A. 1994 Jan 4;91(1):177-81. doi: 10.1073/pnas.91.1.177.
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本文引用的文献

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The nucleotide sequence of the HIS4 region of yeast.酵母HIS4区域的核苷酸序列。
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By searching processively RecA protein pairs DNA molecules that share a limited stretch of homology.通过逐步搜索,RecA蛋白会配对具有有限同源片段的DNA分子。
Cell. 1983 Sep;34(2):647-54. doi: 10.1016/0092-8674(83)90397-5.
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The double-strand-break repair model for recombination.用于重组的双链断裂修复模型。
DNA损伤与修复中的染色质和核小体动力学
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Editing the Genome Without Double-Stranded DNA Breaks.在不造成双链 DNA 断裂的情况下编辑基因组。
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Recombination at subtelomeres is regulated by physical distance, double-strand break resection and chromatin status.亚端粒处的重组受物理距离、双链断裂切除和染色质状态的调控。
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A genome-wide map of adeno-associated virus-mediated human gene targeting.腺相关病毒介导的人类基因靶向作用的全基因组图谱。
Nat Struct Mol Biol. 2014 Nov;21(11):969-75. doi: 10.1038/nsmb.2895. Epub 2014 Oct 5.
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Checkpoint kinases and the INO80 nucleosome remodeling complex enhance global chromatin mobility in response to DNA damage.检查点激酶和 INO80 核小体重塑复合物增强了对 DNA 损伤的全局染色质流动性。
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