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用于关联分析的非参数检验:基于依存同胞对

Nonparametric tests for linkage with dependent sib pairs.

作者信息

Collins A, Morton N E

机构信息

Human Genetics Group, University of Southampton, Princess Anne Hospital, UK.

出版信息

Hum Hered. 1995 Nov-Dec;45(6):311-8. doi: 10.1159/000154299.

DOI:10.1159/000154299
PMID:8537078
Abstract

Sib pair tests for linkage to a quantitative trait or affection status are examined by simulation. A sibship of size s contributes only s-1 independent sib pairs but all s(s-1)/2 pairs are needed for an efficient test. Redundancy increases with sibship size. Using simulated data on the null hypothesis of no linkage, we have considered equal and unequal weights. Unequal weights lose power as measured by the equivalent number of observations, and goodness of fit to the theoretical distribution is degraded. The Fisher z(r) test with equally weighted pairs is more reliable than any t(r) test based on conjectured degrees of freedom, but significance levels must be established by simulation if the number of pairs is small or redundancy is large. An approach to parametric analysis through nuisance parameters is discussed.

摘要

通过模拟研究了用于定量性状或患病状态连锁分析的同胞对检验。大小为(s)的同胞组仅贡献(s - 1)个独立的同胞对,但为了进行高效检验,需要所有(s(s - 1)/2)对。冗余度随同胞组大小增加。利用无连锁零假设的模拟数据,我们考虑了等权重和不等权重。按等效观察数衡量,不等权重会降低检验效能,并且与理论分布的拟合优度会下降。具有等权重对的Fisher z(r)检验比基于推测自由度的任何t(r)检验更可靠,但如果对数较少或冗余度较大,则必须通过模拟来确定显著性水平。讨论了一种通过干扰参数进行参数分析的方法。

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Nonparametric tests for linkage with dependent sib pairs.用于关联分析的非参数检验:基于依存同胞对
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引用本文的文献

1
A score-statistic approach for the mapping of quantitative-trait loci with sibships of arbitrary size.一种用于绘制任意大小同胞对数量性状位点的计分统计方法。
Am J Hum Genet. 2002 Feb;70(2):412-24. doi: 10.1086/338659. Epub 2001 Dec 27.
2
Sampling strategies for model free linkage analyses of quantitative traits: implications for sib pair studies of reading and spelling disabilities to minimize the total study cost.数量性状无模型连锁分析的抽样策略:对阅读和拼写障碍同胞对研究的启示,以最小化总研究成本。
Eur Child Adolesc Psychiatry. 1999;8 Suppl 3:35-9. doi: 10.1007/pl00010691.
3
Significance levels in complex inheritance.
复杂遗传中的显著性水平。
Am J Hum Genet. 1998 Mar;62(3):690-7. doi: 10.1086/301741.
4
Comparison of parametric and nonparametric methods to map oligogenes by linkage.通过连锁分析定位寡基因的参数法和非参数法比较。
Proc Natl Acad Sci U S A. 1997 May 13;94(10):5344-8. doi: 10.1073/pnas.94.10.5344.
5
Logarithm of odds (lods) for linkage in complex inheritance.复杂遗传中连锁的优势对数(lods)
Proc Natl Acad Sci U S A. 1996 Apr 16;93(8):3471-6. doi: 10.1073/pnas.93.8.3471.