• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

蛋白质和核酸中环电流效应的校准。

Calibration of ring-current effects in proteins and nucleic acids.

作者信息

Case D A

机构信息

Department of Molecular Biology, Scripps Research Institute, La Jolla, CA 92037, USA.

出版信息

J Biomol NMR. 1995 Dec;6(4):341-6. doi: 10.1007/BF00197633.

DOI:10.1007/BF00197633
PMID:8563464
Abstract

Density functional chemical shielding calculations are reported for methane molecules placed in a variety of positions near aromatic rings of the type found in proteins and nucleic acids. The results are compared to empirical formulas that relate these intermolecular shielding effects to magnetic anisotropy ('ring-current') effects and to electrostatic polarization of the C-H bonds. Good agreement is found between the empirical formulas and the quantum chemistry results, allowing a reassessment of the ring-current intensity factors for aromatic amino acids and nucleic acid bases. Electrostatic interactions contribute significantly to the computed chemical shift dispersion. Prospects for using this information in the analysis of chemical shifts in proteins and nucleic acids are discussed.

摘要

本文报道了对处于蛋白质和核酸中常见类型芳香环附近各种位置的甲烷分子进行的密度泛函化学屏蔽计算。将结果与将这些分子间屏蔽效应与磁各向异性(“环电流”)效应以及C - H键的静电极化相关联的经验公式进行了比较。发现经验公式与量子化学结果之间具有良好的一致性,从而能够重新评估芳香族氨基酸和核酸碱基的环电流强度因子。静电相互作用对计算出的化学位移分散有显著贡献。文中还讨论了在蛋白质和核酸化学位移分析中使用该信息的前景。

相似文献

1
Calibration of ring-current effects in proteins and nucleic acids.蛋白质和核酸中环电流效应的校准。
J Biomol NMR. 1995 Dec;6(4):341-6. doi: 10.1007/BF00197633.
2
Prediction of fluorine chemical shifts in proteins.蛋白质中氟化学位移的预测。
Biopolymers. 1991 Jun;31(7):845-58. doi: 10.1002/bip.360310705.
3
Nature and magnitude of aromatic stacking of nucleic acid bases.核酸碱基芳香堆积的本质与程度
Phys Chem Chem Phys. 2008 May 21;10(19):2595-610. doi: 10.1039/b719370j. Epub 2008 Apr 7.
4
(1) H NMR Spectra. Part 28: Proton chemical shifts and couplings in three-membered rings. A ring current model for cyclopropane and a novel dihedral angle dependence for (3) J(HH) couplings involving the epoxy proton.(1) 1H NMR 光谱。第 28 部分:三元环中的质子化学位移和偶合。环丙烷的环电流模型和涉及环氧质子的(3)J(HH)偶合的新型二面角依赖性。
Magn Reson Chem. 2012 Apr;50(4):305-13. doi: 10.1002/mrc.3808. Epub 2012 Mar 8.
5
Ab-initio quantum mechanical calculations of NMR chemical shifts in nucleic acid constituents. I. The Watson-Crick base pairs.核酸成分中核磁共振化学位移的从头算量子力学计算。I. 沃森-克里克碱基对。
J Biomol Struct Dyn. 1984 Aug;2(1):233-48. doi: 10.1080/07391102.1984.10507560.
6
Calculating the response of NMR shielding tensor σ(31P) and 2J(31P,13C) coupling constants in nucleic acid phosphate to coordination of the Mg2+ cation.计算核磁屏蔽张量σ(31P)和 2J(31P,13C)耦合常数在核酸磷酸盐与 Mg2+阳离子配位时的响应。
J Phys Chem A. 2011 Mar 24;115(11):2385-95. doi: 10.1021/jp1114114. Epub 2011 Mar 2.
7
31P chemical shift tensors for canonical and non-canonical conformations of nucleic acids: a DFT study and NMR implications.核酸标准和非标准构象的31P化学位移张量:密度泛函理论研究及核磁共振意义
J Phys Chem B. 2008 Mar 20;112(11):3470-8. doi: 10.1021/jp076073n. Epub 2008 Feb 26.
8
Measurement of eight scalar and dipolar couplings for methine-methylene pairs in proteins and nucleic acids.蛋白质和核酸中甲氢-亚甲基对的八个标量和偶极耦合的测量。
J Biomol NMR. 2005 Mar;31(3):201-16. doi: 10.1007/s10858-005-0175-z.
9
Carbon-13 chemical-shift tensors in indigo: A two-dimensional NMR-ROCSA and DFT Study.靛蓝中碳-13化学位移张量:二维核磁共振旋转回波化学位移相关谱(NMR-ROCSA)和密度泛函理论(DFT)研究
Solid State Nucl Magn Reson. 2015 Nov;72:90-5. doi: 10.1016/j.ssnmr.2015.08.004. Epub 2015 Sep 3.
10
Carbon-13 NMR shielding in the twenty common amino acids: comparisons with experimental results in proteins.二十种常见氨基酸中的碳-13核磁共振屏蔽:与蛋白质实验结果的比较。
J Am Chem Soc. 2002 May 15;124(19):5486-95. doi: 10.1021/ja011863a.

引用本文的文献

1
Probing Protein-Ligand Methyl-π Interaction Geometries through Chemical Shift Measurements of Selectively Labeled Methyl Groups.通过选择性标记甲基的化学位移测量探究蛋白质-配体甲基-π相互作用几何结构
J Med Chem. 2024 Aug 8;67(15):13187-13196. doi: 10.1021/acs.jmedchem.4c01128. Epub 2024 Jul 28.
2
Aromatic ring flips in differently packed ubiquitin protein crystals from MAS NMR and MD.来自魔角旋转核磁共振(MAS NMR)和分子动力学(MD)的不同堆积的泛素蛋白晶体中的芳环翻转
J Struct Biol X. 2022 Dec 6;7:100079. doi: 10.1016/j.yjsbx.2022.100079. eCollection 2023.
3
A Step toward NRF2-DNA Interaction Inhibitors by Fragment-Based NMR Methods.

本文引用的文献

1
Accurate and simple analytic representation of the electron-gas correlation energy.电子气关联能的精确且简单的解析表示。
Phys Rev B Condens Matter. 1992 Jun 15;45(23):13244-13249. doi: 10.1103/physrevb.45.13244.
2
Analysis of proton chemical shifts in regular secondary structure of proteins.蛋白质规则二级结构中质子化学位移的分析
J Biomol NMR. 1994 Mar;4(2):215-30. doi: 10.1007/BF00175249.
3
Solution structure of carbonmonoxy myoglobin determined from nuclear magnetic resonance distance and chemical shift constraints.
基于片段的 NMR 方法研究 NRF2-DNA 相互作用抑制剂的进展。
ChemMedChem. 2021 Dec 6;16(23):3576-3587. doi: 10.1002/cmdc.202100458. Epub 2021 Oct 8.
4
Accurate prediction of chemical shifts for aqueous protein structure on "Real World" data.基于“真实世界”数据对水性蛋白质结构化学位移的准确预测。
Chem Sci. 2020 Mar 3;11(12):3180-3191. doi: 10.1039/c9sc06561j.
5
Temperature-Dependent Solid-State NMR Proton Chemical-Shift Values and Hydrogen Bonding.温度依赖的固态核磁共振质子化学位移值与氢键
J Phys Chem B. 2021 Jun 17;125(23):6222-6230. doi: 10.1021/acs.jpcb.1c04061. Epub 2021 Jun 7.
6
Chemical shift prediction of RNA imino groups: application toward characterizing RNA excited states.RNA 亚氨基化学位移预测:在表征 RNA 激发态中的应用。
Nat Commun. 2021 Mar 11;12(1):1595. doi: 10.1038/s41467-021-21840-x.
7
PI by NMR: Probing CH-π Interactions in Protein-Ligand Complexes by NMR Spectroscopy.通过 NMR 探测 PI:通过 NMR 光谱法探测蛋白质-配体复合物中的 CH-π 相互作用。
Angew Chem Int Ed Engl. 2020 Aug 24;59(35):14861-14868. doi: 10.1002/anie.202003732. Epub 2020 Jul 15.
8
Nucleotide Binding Modes in a Motor Protein Revealed by P- and H-Detected MAS Solid-State NMR Spectroscopy.通过磷和氢检测的魔角旋转固态核磁共振光谱揭示的驱动蛋白中的核苷酸结合模式
Chembiochem. 2020 Feb 3;21(3):324-330. doi: 10.1002/cbic.201900439. Epub 2019 Sep 30.
9
Why the Energy Landscape of Barnase Is Hierarchical.为什么巴纳酶的能量景观是分层的。
Front Mol Biosci. 2018 Dec 20;5:115. doi: 10.3389/fmolb.2018.00115. eCollection 2018.
10
Assessing and refining molecular dynamics simulations of proteins with nuclear magnetic resonance data.利用核磁共振数据评估和优化蛋白质的分子动力学模拟
Biophys Rev. 2012 Sep;4(3):189-203. doi: 10.1007/s12551-012-0087-6. Epub 2012 Sep 1.
由核磁共振距离和化学位移限制条件确定的一氧化碳肌红蛋白的溶液结构
J Mol Biol. 1994 Nov 25;244(2):183-97. doi: 10.1006/jmbi.1994.1718.
4
'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.肽系列GGXGG的“无规卷曲”¹H化学位移随温度和三氟乙醇浓度的变化而获得。
J Biomol NMR. 1995 Jan;5(1):14-24. doi: 10.1007/BF00227466.
5
Use of chemical shifts and coupling constants in nuclear magnetic resonance structural studies on peptides and proteins.化学位移和耦合常数在肽和蛋白质核磁共振结构研究中的应用。
Methods Enzymol. 1994;239:392-416. doi: 10.1016/s0076-6879(94)39015-0.
6
The impact of direct refinement against proton chemical shifts on protein structure determination by NMR.直接精修质子化学位移对核磁共振蛋白质结构测定的影响。
J Magn Reson B. 1995 Jun;107(3):293-7. doi: 10.1006/jmrb.1995.1093.
7
Chemical shifts and three-dimensional protein structures.化学位移与蛋白质三维结构
J Biomol NMR. 1995 Apr;5(3):217-25. doi: 10.1007/BF00211749.
8
Comparisons of ring-current shifts calculated from the crystal structure of egg white lysozyme of hen with the proton nuclear magnetic resonance spectrum of lysozyme in solution.根据母鸡蛋清溶菌酶的晶体结构计算出的环电流位移与溶液中溶菌酶的质子核磁共振谱的比较。
Biochemistry. 1980 Jan 22;19(2):245-58. doi: 10.1021/bi00543a001.
9
Quantum mechanical calculations of NMR chemical shifts in nucleic acids.核酸中核磁共振化学位移的量子力学计算。
Q Rev Biophys. 1987 Nov;20(3-4):113-72. doi: 10.1017/s0033583500004169.
10
Resonance assignments of non-exchangeable protons in B type DNA oligomers, an overview.B型DNA寡聚物中不可交换质子的共振归属概述
Nucleic Acids Res. 1988 Jul 11;16(13):5713-26. doi: 10.1093/nar/16.13.5713.