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酵母第八条染色体中的新蛋白质功能。

New protein functions in yeast chromosome VIII.

作者信息

Ouzounis C, Bork P, Casari G, Sander C

机构信息

European Molecular Biology Laboratory-Heidelberg, Germany.

出版信息

Protein Sci. 1995 Nov;4(11):2424-8. doi: 10.1002/pro.5560041121.

DOI:10.1002/pro.5560041121
PMID:8563640
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2143003/
Abstract

The analysis of the 269 open reading frames of yeast chromosome VIII by computational methods has yielded 24 new significant sequence similarities to proteins of known function. The resulting predicted functions include three particularly interesting cases of translation-associated proteins: peptidyl-tRNA hydrolase, a ribosome recycling factor homologue, and a protein similar to cytochrome b translational activator CBS2. The methodological limits of the meaningful transfer of functional information between distant homologues are discussed.

摘要

通过计算方法对酵母八号染色体的269个开放阅读框进行分析,发现了24个与已知功能蛋白质具有新的显著序列相似性的结果。由此预测的功能包括三个特别有趣的与翻译相关的蛋白质案例:肽基-tRNA水解酶、核糖体循环因子同源物以及一种类似于细胞色素b翻译激活因子CBS2的蛋白质。本文还讨论了在远缘同源物之间进行功能信息有意义传递的方法学局限性。

相似文献

1
New protein functions in yeast chromosome VIII.酵母第八条染色体中的新蛋白质功能。
Protein Sci. 1995 Nov;4(11):2424-8. doi: 10.1002/pro.5560041121.
2
Analysis of an 11.7 kb DNA fragment of chromosome XI reveals a new tRNA gene and four new open reading frames including a leucine zipper protein and a homologue to the yeast mitochondrial regulator ABF2.对第十一条染色体上一个11.7 kb的DNA片段进行分析,发现了一个新的tRNA基因和四个新的开放阅读框,其中包括一个亮氨酸拉链蛋白和一个与酵母线粒体调节因子ABF2同源的蛋白。
Yeast. 1994 Jan;10(1):125-30. doi: 10.1002/yea.320100112.
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Yeast. 1998 Aug;14(11):1027-39. doi: 10.1002/(SICI)1097-0061(199808)14:11<1027::AID-YEA295>3.0.CO;2-S.
4
Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III.酵母三号染色体182个预测开放阅读框的全面序列分析。
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Yeast. 1997 Mar 30;13(4):365-8. doi: 10.1002/(SICI)1097-0061(19970330)13:4<365::AID-YEA78>3.0.CO;2-F.
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The sequence of an 11.1 kb fragment on the left arm of Saccharomyces cerevisiae chromosome VII reveals six open reading frames including NSP49, KEM1 and four putative new genes.酿酒酵母七号染色体左臂上一个11.1 kb片段的序列揭示了六个开放阅读框,包括NSP49、KEM1和四个假定的新基因。
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本文引用的文献

1
Yeast chromosome III: new gene functions.酵母三号染色体:新的基因功能。
EMBO J. 1994 Feb 1;13(3):493-503. doi: 10.1002/j.1460-2075.1994.tb06287.x.
2
Methionine as translation start signal: a review of the enzymes of the pathway in Escherichia coli.甲硫氨酸作为翻译起始信号:大肠杆菌中该途径相关酶的综述
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Complete DNA sequence of yeast chromosome XI.酵母第十一号染色体的完整DNA序列。
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4
Ribosome recycling factor (ribosome releasing factor) is essential for bacterial growth.核糖体循环因子(核糖体释放因子)对细菌生长至关重要。
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Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII.酿酒酵母第八条染色体的完整核苷酸序列。
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7
Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks.蛋白质中保守片段的检测:使用比对模块对序列数据库进行迭代扫描。
Proc Natl Acad Sci U S A. 1994 Dec 6;91(25):12091-5. doi: 10.1073/pnas.91.25.12091.
8
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.CLUSTAL W:通过序列加权、位置特异性空位罚分和权重矩阵选择提高渐进多序列比对的灵敏度。
Nucleic Acids Res. 1994 Nov 11;22(22):4673-80. doi: 10.1093/nar/22.22.4673.
9
Complete DNA sequence of yeast chromosome II.酵母二号染色体的完整DNA序列。
EMBO J. 1994 Dec 15;13(24):5795-809. doi: 10.1002/j.1460-2075.1994.tb06923.x.
10
The nucleotide sequence of chromosome I from Saccharomyces cerevisiae.酿酒酵母一号染色体的核苷酸序列。
Proc Natl Acad Sci U S A. 1995 Apr 25;92(9):3809-13. doi: 10.1073/pnas.92.9.3809.