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利用DNA结合蛋白通过链置换扩增和荧光偏振进行DNA检测并增强信号。

DNA detection by strand displacement amplification and fluorescence polarization with signal enhancement using a DNA binding protein.

作者信息

Walker G T, Linn C P, Nadeau J G

机构信息

Becton Dickinson Research Center, Research Triangle Park, NC 27709-2016, USA.

出版信息

Nucleic Acids Res. 1996 Jan 15;24(2):348-53. doi: 10.1093/nar/24.2.348.

DOI:10.1093/nar/24.2.348
PMID:8628661
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC145624/
Abstract

Strand displacement amplification (9SDA) is an isothermal in vitro method of amplifying a DNA sequence prior to its detection. We have combined SDA with fluorescence polarization detection. A 5'-fluorescein-labelled oligodeoxynucleotide detector probe hybridizes to the amplification product that rises in concentration during SDA and the single- to double strand conversion is monitored through an increase in fluorescence polarization. Detection sensitivity can be enhanced by using a detector probe containing an EcoRI recognition sequence at its 5'-end that is not homologous to the target sequence. During SDA the probe is converted to a fully double-stranded form that specifically binds a genetically modified form of the endonuclease EcoRI which lacks cleavage activity but retains binding specificity. We have applied this SDA detection system to a target sequence specific for Mycobacterium tuberculosis.

摘要

链置换扩增(SDA)是一种在体外等温条件下,在检测DNA序列之前对其进行扩增的方法。我们将SDA与荧光偏振检测相结合。一个5'-荧光素标记的寡脱氧核苷酸检测探针与在SDA过程中浓度升高的扩增产物杂交,通过荧光偏振的增加来监测单链到双链的转变。通过使用在其5'-末端含有一个与靶序列不同源的EcoRI识别序列的检测探针,可以提高检测灵敏度。在SDA过程中,该探针被转化为完全双链形式,它能特异性结合一种经过基因改造的内切酶EcoRI,这种EcoRI缺乏切割活性但保留结合特异性。我们已将这种SDA检测系统应用于结核分枝杆菌特异性的靶序列。

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本文引用的文献

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Anal Chem. 1995 Nov 1;67(21):3945-51. doi: 10.1021/ac00117a020.
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Fluorescence anisotropy assays implicate protein-protein interactions in regulating trp repressor DNA binding.荧光各向异性分析表明,蛋白质-蛋白质相互作用参与调节色氨酸阻遏蛋白与DNA的结合。
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Multiplex strand displacement amplification (SDA) and detection of DNA sequences from Mycobacterium tuberculosis and other mycobacteria.多重链置换扩增(SDA)及结核分枝杆菌和其他分枝杆菌DNA序列的检测
Nucleic Acids Res. 1994 Jul 11;22(13):2670-7. doi: 10.1093/nar/22.13.2670.
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DNA determinants important in sequence recognition by Eco RI endonuclease.对Eco RI核酸内切酶序列识别很重要的DNA决定因素。
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Facilitated diffusion during catalysis by EcoRI endonuclease. Nonspecific interactions in EcoRI catalysis.大肠杆菌 EcoRI 核酸内切酶催化过程中的促进扩散。EcoRI 催化中的非特异性相互作用。
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