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苔藓植物中的RNA编辑与陆地植物的分子系统发育

RNA editing in bryophytes and a molecular phylogeny of land plants.

作者信息

Malek O, Lättig K, Hiesel R, Brennicke A, Knoop V

机构信息

Allgemeine Botanik, Universitat Ulm, Berlin, Germany.

出版信息

EMBO J. 1996 Mar 15;15(6):1403-11.

PMID:8635473
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC450045/
Abstract

RNA editing has been observed to date in all groups of vascular plants, but not in bryophytes. Its occurrence was therefore assumed to correlate with the evolution of tracheophytes. To gain more insight into both the phylogeny of early land plants and the evolution of mitochondrial RNA editing we have investigated a number of vascular and non-vascular plant species. Contrary to the belief that editing is absent from bryophytes, here we report mitochondrial RNA editing in cox3 mRNA of the liverwort Pellia epiphylla, the mosses Tetraphis pellucida and Ceratodon purpureus and the hornwort Anthroceros crispulus. RNA editing in plants consequently predates the evolution of tracheophytes. Editing is also found in the eusporangiate ferns Ophioglossum petiolatum and Angiopteris palmiformis, the whisk fern Tmesipteris elongata and the gnetopsid Ephedra gerardiana, but was not detected in Gnetum gnemon.cox3 mRNA of the lycopsid Isoetes lacustris shows the highest frequency of RNA editing ever observed in a plant, with 39% of all cytidine residues converted to uridines. The frequency of RNA editing correlates with the genomic GC content rather than with the phylogenetic position of a species. Phylogenetic trees derived from the slowly evolving mitochondrial sequences find external support from the assessments of classical systematics.

摘要

迄今为止,在所有维管植物类群中均观察到了RNA编辑现象,但苔藓植物中未观察到。因此,人们认为其出现与维管植物的进化相关。为了更深入了解早期陆地植物的系统发育以及线粒体RNA编辑的进化过程,我们研究了多种维管植物和非维管植物物种。与苔藓植物不存在编辑现象的观点相反,我们在此报告了叶苔类植物浮苔、藓类植物透明叶藓和角齿藓以及角苔类植物脆角苔线粒体cox3 mRNA中的RNA编辑现象。因此,植物中的RNA编辑现象早于维管植物的进化。在厚囊蕨类植物带状瓶尔小草和掌状观音座莲、松叶蕨类植物长叶松叶蕨以及麻黄科植物丽江麻黄中也发现了编辑现象,但在马来西亚买麻藤中未检测到。石松类植物水韭的cox3 mRNA显示出植物中迄今观察到的最高RNA编辑频率,所有胞嘧啶残基中有39%被转化为尿嘧啶。RNA编辑频率与基因组GC含量相关,而非与物种的系统发育位置相关。从进化缓慢的线粒体序列推导的系统发育树得到了经典分类学评估的外部支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac7/450045/f5b2712f656b/emboj00006-0204-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac7/450045/f5b2712f656b/emboj00006-0204-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ac7/450045/f5b2712f656b/emboj00006-0204-a.jpg

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本文引用的文献

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Science. 1992 Mar 27;255(5052):1697-9. doi: 10.1126/science.255.5052.1697.
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On the evolution of RNA editing.论RNA编辑的进化
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Evidence for RNA editing in mitochondria of all major groups of land plants except the Bryophyta.除苔藓植物外,所有主要陆地植物类群的线粒体中存在RNA编辑的证据。
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Comparative analysis of organellar genomes between diploid and tetraploid with its relatives.二倍体和四倍体与其近缘种之间细胞器基因组的比较分析。
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Mitochondrial RNA editing sites affect the phylogenetic reconstruction of gymnosperms.线粒体RNA编辑位点影响裸子植物的系统发育重建。
Plant Divers. 2023 Feb 23;45(4):485-489. doi: 10.1016/j.pld.2023.02.004. eCollection 2023 Jul.
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Mitochondrial Genome Analysis and Monocot Mitochondria Phylogenomics.线粒体基因组分析与单子叶植物线粒体系统发生基因组学。
Int J Mol Sci. 2023 Apr 25;24(9):7837. doi: 10.3390/ijms24097837.
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The garden asparagus ( L.) mitochondrial genome revealed rich sequence variation throughout whole sequencing data.石刁柏(L.)线粒体基因组在整个测序数据中显示出丰富的序列变异。
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Complete mitochondrial genome assembly and comparison of var. cv. .完整线粒体基因组组装及[品种名称]变种的比较。 需注意,原文中“var. cv..”表述不太完整准确,可能存在信息缺失,这里是根据常见的格式进行的大致翻译。
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Plant mitochondrial nucleic acid sequences as a tool for phylogenetic analysis.植物线粒体核酸序列作为系统发育分析的工具。
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