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对一段包含来自酿酒酵母第六条染色体右端粒的36.2 kb DNA序列的分析。

Analysis of a 36.2 kb DNA sequence including the right telomere of chromosome VI from Saccharomyces cerevisiae.

作者信息

Eki T, Naitou M, Hagiwara H, Ozawa M, Sasanuma S I, Sasanuma M, Tsuchiya Y, Shibata T, Hanaoka F, Murakami Y

机构信息

Division of Human Genome Research and Gene Bank, Tsukuba Life Science Center, Ibaraki, Japan.

出版信息

Yeast. 1996 Feb;12(2):149-67. doi: 10.1002/(SICI)1097-0061(199602)12:2%3C149::AID-YEA893%3E3.0.CO;2-G.

Abstract

The nucleotide sequence of a 36.2-kb distal region containing the right telomere of chromosome VI was determined. Both strands of DNA cloned into cosmid clone 9965 and plasmid clone pEL174P2 were sequenced with an average redundancy of 7.9 per base pair, by both dye primer and dye terminator cycle sequencing methods. The G+C content of the sequence was found to be 37.9%. Eighteen open reading frames (ORFs) longer than 100 amino acids were detected. Four of these ORFs (9965orfR017, 9965orfF016, 9965orfR009 and 9965orfF003) were found to encode previously identified genes (YMR31, PRE4, NIN1 and HXK1, respectively). Six ORFs (9965orfR013, 9965orfF018, 9965orfF006, 9965orfR014, 9965orfF013 and 9965orfR020) were found to be homologous to hypothetical 121.4-kDa protein in the BCK 5' region, Bacillus subtilis DnaJ protein, hypothetical Trp-Asp repeats containing protein in DBP3-MRPL27, putative mitochondrial carrier YBR291C protein, Salmonella typhimurium nicotinate-nucleotide pyrophosphorylase, and Escherichia coli cystathionine beta-lyase, respectively. The putative proteins encoded by 9965orfF018, 9965orfR014 and 9965orfR020 were found to be, respectively, a new member of the family of DnaJ-like proteins, the mitochondrial carrier protein and cystathionine lyase.

摘要

测定了包含第六条染色体右端粒的36.2 kb远端区域的核苷酸序列。通过染料引物和染料终止子循环测序方法,对克隆到黏粒克隆9965和质粒克隆pEL174P2中的DNA两条链进行了测序,平均每碱基对的冗余度为7.9。发现该序列的G+C含量为37.9%。检测到18个长度超过100个氨基酸的开放阅读框(ORF)。其中4个ORF(9965orfR017、9965orfF016、9965orfR009和9965orfF003)被发现分别编码先前鉴定的基因(分别为YMR31、PRE4、NIN1和HXK1)。6个ORF(9965orfR013、9965orfF018、9965orfF006、9965orfR014、9965orfF013和9965orfR020)分别被发现与BCK 5'区域的假定121.4 kDa蛋白、枯草芽孢杆菌DnaJ蛋白、DBP3-MRPL27中含假定色氨酸-天冬氨酸重复序列的蛋白、假定线粒体载体YBR291C蛋白、鼠伤寒沙门氏菌烟酸核苷酸焦磷酸化酶和大肠杆菌胱硫醚β-裂解酶同源。发现由9965orfF018、9965orfR014和9965orfR020编码的假定蛋白分别是DnaJ样蛋白家族的新成员、线粒体载体蛋白和胱硫醚裂解酶。

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