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半同胞间基因组共享同源片段的分布:基于泊松聚类启发式方法的近似估计

Distribution of genome shared IBD by half-sibs: approximation by the Poisson clumping heuristic.

作者信息

Bickeböller H, Thompson E A

机构信息

INSERM U.155, Château de Longchamp, Paris, France.

出版信息

Theor Popul Biol. 1996 Aug;50(1):66-90. doi: 10.1006/tpbi.1996.0023.

Abstract

The distribution of the proportion of genome shared identical by descent (IBD) by c half-sibs is calculated for a general c. With data availability the consideration of the chromosome as a whole rather than discrete loci becomes of increasing practical importance. Assuming the genomic continuum model, which allows for recombination, the crossover process in a chromosome pedigree is viewed as a continuous-time Markov random walk on the vertices of a hypercube with time parameter map distance along the chromosome. The desired distribution corresponds to the distribution of sojourn times of the process in a small set of vertices. The sojourn times are well approximated via the Poisson clumping heuristic. It is shown explicitly that there is no "equivalent" number of independently segregating loci that will yield the same results as with the genomic continuum model. Results are given for the human genome.

摘要

针对一般的c,计算了同父异母(或同母异父)半同胞通过血统共享相同基因组比例的分布情况。随着数据可得性的提高,将染色体作为一个整体而非离散位点来考虑变得越来越具有实际重要性。假设基因组连续模型,该模型允许重组,染色体谱系中的交叉过程被视为超立方体顶点上的连续时间马尔可夫随机游走,时间参数为沿染色体的图谱距离。所需的分布对应于该过程在一小部分顶点上的逗留时间分布。逗留时间通过泊松聚类启发法得到了很好的近似。明确表明不存在“等效”数量的独立分离位点能产生与基因组连续模型相同的结果。给出了人类基因组的结果。

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