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一张整合了酵母人工染色体(YACs)、基因和序列标签位点(STS)标记的覆盖整个人类X染色体的辐射杂种图谱。

A radiation hybrid map spanning the entire human X chromosome integrating YACs, genes, and STS markers.

作者信息

Kumlien J, Grigoriev A, Roest Crollius H, Ross M, Goodfellow P N, Lehrach H

机构信息

Department of Genome Analysis, Imperial Cancer Research Fund, P.O. Box 123, 44 Lincoln's Inn Fields, London WC2A 3 PX, UK.

出版信息

Mamm Genome. 1996 Oct;7(10):758-66. doi: 10.1007/s003359900227.

DOI:10.1007/s003359900227
PMID:8854864
Abstract

We present a radiation hybrid (RH) map of human Chromosome (Chr) X, using 50 markers on 72 radiation hybrids. The markers, obtained from the consensus map, form a grid spanning the entire chromosome. To check the RH map, the marker order was determined by analysis of presence or absence of retained human DNA fragments in the RHs; the comparison with the consensus showed a similar order. Any STSs, microsatellites, genes, and clones can be positioned and ordered relative to the marker grid. This approach integrates genetic, physical, and large-scale clone mapping and is used to link YAC contigs containing data from various experimental sources.

摘要

我们利用72个辐射杂种细胞上的50个标记构建了人类X染色体的辐射杂种(RH)图谱。这些标记取自一致性图谱,形成了覆盖整条染色体的网格。为检验该RH图谱,通过分析辐射杂种细胞中保留的人类DNA片段的有无来确定标记顺序;与一致性图谱的比较显示顺序相似。任何序列标签位点(STS)、微卫星、基因和克隆都可相对于标记网格进行定位和排序。这种方法整合了遗传、物理和大规模克隆图谱,用于连接包含来自各种实验来源数据的酵母人工染色体(YAC)重叠群。

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本文引用的文献

1
Rapid construction of integrated maps using inner product mapping: YAC coverage of human chromosome 11.利用内积映射快速构建整合图谱:人类11号染色体的酵母人工染色体覆盖情况
Genomics. 1995 Jul 20;28(2):315-27. doi: 10.1006/geno.1995.1148.
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Algorithms and software tools for ordering clone libraries: application to the mapping of the genome of Schizosaccharomyces pombe.用于排序克隆文库的算法和软件工具:在粟酒裂殖酵母基因组图谱绘制中的应用。
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An automated approach to generating expressed sequence catalogues.
Nature. 1993 Jan 28;361(6410):375-6. doi: 10.1038/361375a0.
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Efficient construction of high-resolution physical maps from yeast artificial chromosomes using radiation hybrids: inner product mapping.
Genomics. 1993 Nov;18(2):283-9. doi: 10.1006/geno.1993.1467.
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Radiation hybrids: irradiation and fusion gene transfer.
Trends Genet. 1993 Oct;9(10):352-6. doi: 10.1016/0168-9525(93)90040-o.
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A radiation hybrid map of the BRCA1 region of chromosome 17q12-q21.
Genomics. 1993 Sep;17(3):632-41. doi: 10.1006/geno.1993.1383.
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A radiation hybrid map of human chromosome 18.人类18号染色体的辐射杂种图谱。
Cytogenet Cell Genet. 1994;66(3):196-213. doi: 10.1159/000133697.
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A method for constructing radiation hybrid maps of whole genomes.一种构建全基因组辐射杂种图谱的方法。
Nat Genet. 1994 May;7(1):22-8. doi: 10.1038/ng0594-22.
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Efficient identification and regional positioning of YAC and cosmid clones to human chromosome 21 by radiation fusion hybrids.通过辐射杂种细胞将YAC和黏粒克隆高效鉴定并定位到人类21号染色体上。
Mamm Genome. 1994 Jun;5(6):365-71. doi: 10.1007/BF00356556.
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Integration of gene maps: chromosome X.基因图谱整合:X染色体
Genomics. 1994 Aug;22(3):590-604. doi: 10.1006/geno.1994.1432.