Marrink S J, Berger O, Tieleman P, Jähnig F
Max-Planck-Institut für Biologie, Abteilung Membranbiochemie, Tübingen, Germany.
Biophys J. 1998 Feb;74(2 Pt 1):931-43. doi: 10.1016/S0006-3495(98)74016-0.
Lipid adhesion forces can be measured using several experimental techniques, but none of these techniques provide insight on the atomic level. Therefore, we performed extensive nonequilibrium molecular dynamics simulations of a phospholipid membrane in the liquid-crystalline phase out of which individual lipid molecules were pulled. In our method, as an idealization of the experimental setups, we have simply attached a harmonic spring to one of the lipid headgroup atoms. Upon retraction of the spring, the force needed to drag the lipid out of the membrane is recorded. By simulating different retraction rates, we were able to investigate the high pull rate part of the dynamical spectrum of lipid adhesion forces. We find that the adhesion force increases along the unbinding path, until the point of rupture is reached. The maximum value of the adhesion force, the rupture force, decreases as the pull rate becomes slower, and eventually enters a friction-dominated regime. The computed bond lengths depend on the rate of rupture, and show some scatter due to the nonequilibrium nature of the experiment. On average, the bond length increases from approximately 1.7 nm to 2.3 nm as the rates go down. Conformational analyses elucidate the detailed mechanism of lipid-membrane bond rupture. We present results of over 15 ns of membrane simulations. Implications for the interpretation and understanding of experimental rupture data are discussed.
脂质粘附力可以通过几种实验技术来测量,但这些技术都无法在原子层面提供深入见解。因此,我们对处于液晶相的磷脂膜进行了广泛的非平衡分子动力学模拟,从中拉出单个脂质分子。在我们的方法中,作为对实验装置的理想化处理,我们只是简单地在一个脂质头部基团原子上连接了一个谐振弹簧。在弹簧回缩时,记录将脂质从膜中拉出所需的力。通过模拟不同的回缩速率,我们能够研究脂质粘附力动态谱的高拉速部分。我们发现,粘附力沿着解离路径增加,直到达到破裂点。粘附力的最大值,即破裂力,随着拉速变慢而减小,并最终进入摩擦主导的区域。计算得到的键长取决于破裂速率,并且由于实验的非平衡性质而呈现出一定的离散性。平均而言,随着速率降低,键长从约1.7纳米增加到2.3纳米。构象分析阐明了脂质 - 膜键断裂的详细机制。我们展示了超过15纳秒的膜模拟结果。讨论了对实验破裂数据解释和理解的影响。