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拉伸超螺旋DNA中的同源配对。

Homologous pairing in stretched supercoiled DNA.

作者信息

Strick T R, Croquette V, Bensimon D

机构信息

Laboratoire de Physique Statistique, Ecole Normale Superieure, 24 rue Lhomond, 75006 Paris, France.

出版信息

Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10579-83. doi: 10.1073/pnas.95.18.10579.

DOI:10.1073/pnas.95.18.10579
PMID:9724746
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC27937/
Abstract

By using elastic measurements on single DNA molecules, we show that stretching a negatively supercoiled DNA activates homologous pairing in physiological conditions. These experiments indicate that a stretched unwound DNA locally denatures to alleviate the force-driven increase in torsional stress. This is detected by hybridization with 1 kb of homologous single-stranded DNA probes. The stretching force involved (approximately 2 pN) is small compared with those typically developed by molecular motors, suggesting that this process may be relevant to DNA processing in vivo. We used this technique to monitor the progressive denaturation of DNA as it is unwound and found that distinct, stable denaturation bubbles formed, beginning in A+T-rich regions.

摘要

通过对单个DNA分子进行弹性测量,我们发现,在生理条件下拉伸负超螺旋DNA会激活同源配对。这些实验表明,拉伸解旋的DNA会局部变性,以缓解力驱动的扭转应力增加。这可通过与1 kb的同源单链DNA探针杂交来检测。与分子马达通常产生的力相比,所涉及的拉伸力(约2皮牛)较小,这表明该过程可能与体内DNA加工有关。我们使用该技术监测DNA解旋时的渐进变性,发现从富含A+T的区域开始形成了明显、稳定的变性泡。

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Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10579-83. doi: 10.1073/pnas.95.18.10579.
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本文引用的文献

1
Statistical mechanics of supercoiled DNA.超螺旋DNA的统计力学
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Sep;52(3):2912-2938. doi: 10.1103/physreve.52.2912.
2
Estimating the persistence length of a worm-like chain molecule from force-extension measurements.通过力-伸长测量估算类蠕虫链分子的持久长度。
Biophys J. 1999 Jan;76(1 Pt 1):409-13. doi: 10.1016/s0006-3495(99)77207-3.
3
Behavior of supercoiled DNA.超螺旋DNA的行为
Biophys J. 1998 Apr;74(4):2016-28. doi: 10.1016/S0006-3495(98)77908-1.
4
Torsional directed walks, entropic elasticity, and DNA twist stiffness.扭转定向行走、熵弹性与DNA扭转刚度。
Proc Natl Acad Sci U S A. 1997 Dec 23;94(26):14418-22. doi: 10.1073/pnas.94.26.14418.
5
Polymer models of meiotic and mitotic chromosomes.减数分裂和有丝分裂染色体的聚合物模型。
Mol Biol Cell. 1997 Nov;8(11):2217-31. doi: 10.1091/mbc.8.11.2217.
6
Mechanical separation of the complementary strands of DNA.DNA互补链的机械分离。
Proc Natl Acad Sci U S A. 1997 Oct 28;94(22):11935-40. doi: 10.1073/pnas.94.22.11935.
7
Measurement of unrestrained negative supercoiling and topological domain size in living human cells.活的人类细胞中无约束负超螺旋和拓扑结构域大小的测量。
Biochemistry. 1997 Mar 18;36(11):3151-8. doi: 10.1021/bi962396q.
8
Homologous DNA pairing promoted by a 20-amino acid peptide derived from RecA.由源自RecA的一种20个氨基酸的肽所促进的同源DNA配对。
Science. 1996 May 10;272(5263):868-72. doi: 10.1126/science.272.5263.868.
9
Getting down to the core of homologous recombination.深入探究同源重组的核心。
Science. 1996 May 10;272(5263):828-9. doi: 10.1126/science.272.5263.828.
10
The elasticity of a single supercoiled DNA molecule.单个超螺旋DNA分子的弹性
Science. 1996 Mar 29;271(5257):1835-7. doi: 10.1126/science.271.5257.1835.